Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABWW09_RS09500 Genome accession   NZ_AP031332
Coordinates   1745976..1747166 (-) Length   396 a.a.
NCBI ID   WP_353300271.1    Uniprot ID   -
Organism   Thermus thermophilus strain TF27     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1740976..1752166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWW09_RS09465 (TthTF27_18680) phoU 1741174..1741836 (-) 663 WP_011174206.1 phosphate signaling complex protein PhoU -
  ABWW09_RS09470 (TthTF27_18690) - 1741851..1742744 (-) 894 WP_244344456.1 ATP-binding protein -
  ABWW09_RS09475 (TthTF27_18700) - 1742741..1743412 (-) 672 WP_353300268.1 response regulator transcription factor -
  ABWW09_RS09480 (TthTF27_18710) - 1743472..1744599 (-) 1128 WP_353300269.1 alanine--tRNA ligase-related protein -
  ABWW09_RS09485 (TthTF27_18720) - 1744619..1744816 (+) 198 WP_014630250.1 hypothetical protein -
  ABWW09_RS09490 (TthTF27_18730) - 1744813..1745544 (+) 732 WP_353300270.1 pseudouridine synthase -
  ABWW09_RS09495 (TthTF27_18740) - 1745512..1745979 (-) 468 WP_014630252.1 hypothetical protein -
  ABWW09_RS09500 (TthTF27_18750) pilC 1745976..1747166 (-) 1191 WP_353300271.1 type II secretion system F family protein Machinery gene
  ABWW09_RS09505 (TthTF27_18760) pilB/pilB1 1747170..1748816 (-) 1647 WP_353300272.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  ABWW09_RS09510 (TthTF27_18770) - 1748794..1749981 (-) 1188 WP_244344461.1 hypothetical protein -
  ABWW09_RS09515 (TthTF27_18780) - 1749991..1750830 (-) 840 WP_353300273.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ABWW09_RS09520 (TthTF27_18790) - 1750827..1751573 (-) 747 WP_353300274.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ABWW09_RS09525 (TthTF27_18800) - 1751570..1751962 (-) 393 WP_353300275.1 hypothetical protein -

Sequence

Protein


Download         Length: 396 a.a.        Molecular weight: 43961.83 Da        Isoelectric Point: 10.0820

>NTDB_id=97624 ABWW09_RS09500 WP_353300271.1 1745976..1747166(-) (pilC) [Thermus thermophilus strain TF27]
MRFLYEATDEKGERVYRGVLEAESPQGARRRLREMGLYPLRLERARRPRGGRVPLPELVLFMEEFATLVGAGVPVTQALH
TLSLESRNPLLKEAARGVRERVEGGEALAQAMEHYPEVFPPLVRALVAAAEVGGALEVVLRRTAEYLDKSHDLREKVRTA
LLYPSFVVAVLVLVVAVLLLFVIPVFSRLYGAAGAELPWPTRFLIGASFFLRQNLLWILLFFLGAFYLLRAWHRTPGGAR
ALDGLLLRLPLVGPILHKAAMARFARTLATLYEGGVLLTQALEATRNTLGNAALAEALDRVLERVVRGESLSAAMSREAL
FLPILVRLALVGEEAGSLDRMLYQATFHLEREVDYALKRLSSSIEPALTVLLGGIMLVVALALYLPLFDLSRILRR

Nucleotide


Download         Length: 1191 bp        

>NTDB_id=97624 ABWW09_RS09500 WP_353300271.1 1745976..1747166(-) (pilC) [Thermus thermophilus strain TF27]
ATGCGTTTCCTCTACGAGGCCACGGACGAGAAGGGCGAGCGGGTCTACCGCGGGGTCCTGGAGGCGGAAAGCCCCCAAGG
GGCGAGGCGCCGCCTCCGGGAGATGGGCCTTTACCCCTTGCGCCTGGAGCGGGCGAGGCGGCCTAGAGGGGGGCGGGTTC
CTCTGCCCGAGCTCGTCCTCTTCATGGAGGAGTTCGCCACCCTGGTGGGGGCCGGGGTCCCCGTGACCCAGGCCCTCCAC
ACCCTCTCCCTGGAGAGCCGGAACCCCCTCCTCAAGGAGGCGGCCCGGGGGGTGCGGGAGCGGGTGGAGGGAGGGGAGGC
CCTGGCCCAGGCTATGGAGCACTACCCCGAGGTCTTCCCCCCCTTGGTGCGGGCTTTGGTGGCGGCGGCCGAGGTGGGTG
GGGCCTTGGAGGTGGTGCTGAGGCGCACCGCCGAGTACCTGGACAAGAGCCACGACCTGCGGGAGAAGGTGCGCACCGCC
CTCCTCTACCCTTCCTTCGTGGTGGCCGTCCTGGTCCTGGTGGTCGCCGTCCTCCTCCTCTTCGTCATCCCCGTCTTTTC
CCGGCTTTATGGGGCAGCGGGAGCGGAGCTTCCCTGGCCCACCCGCTTCCTGATCGGCGCCTCCTTCTTCCTGCGGCAGA
ACCTGCTCTGGATCCTCCTCTTCTTCCTGGGTGCCTTCTACCTCCTTCGGGCCTGGCACCGGACCCCGGGAGGGGCGAGG
GCCTTGGACGGCCTTCTCCTCCGCCTCCCCCTCGTGGGCCCCATCCTCCACAAGGCGGCCATGGCCCGCTTCGCCCGCAC
CCTGGCCACCCTGTACGAGGGCGGGGTGCTCCTCACCCAGGCCCTCGAGGCCACCCGGAACACCTTGGGCAACGCCGCCC
TGGCCGAGGCCCTGGACCGGGTGCTGGAACGGGTGGTGCGCGGGGAGTCCTTAAGCGCCGCCATGAGCCGGGAGGCCCTC
TTCCTCCCCATCCTGGTGCGGCTCGCCCTGGTGGGGGAGGAGGCAGGGAGCCTGGACCGGATGCTCTACCAGGCGACCTT
CCACCTGGAGCGCGAGGTGGACTACGCCCTCAAGCGGCTTTCCTCCAGCATTGAGCCCGCCCTCACCGTGCTTCTCGGGG
GTATAATGCTCGTGGTCGCCCTTGCCCTGTATCTGCCCCTCTTTGACTTGTCCCGGATCCTGCGCCGATGA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(264-386)

Type II secretion system (T2SS), protein F (T2SSF)

(61-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Thermus thermophilus HB27

35.661

100

0.361