Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | AADH33_RS12615 | Genome accession | NZ_CP151283 |
| Coordinates | 3042612..3043835 (+) | Length | 407 a.a. |
| NCBI ID | WP_075101362.1 | Uniprot ID | - |
| Organism | Psychrobacter sp. KFRI-CH2-11 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3037612..3048835
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AADH33_RS12600 (AADH33_12590) | secG | 3038626..3038934 (-) | 309 | WP_075101365.1 | preprotein translocase subunit SecG | - |
| AADH33_RS12605 (AADH33_12595) | tpiA | 3039366..3040175 (-) | 810 | WP_348549107.1 | triose-phosphate isomerase | - |
| AADH33_RS12610 (AADH33_12600) | pilB | 3040526..3042241 (+) | 1716 | WP_348549108.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AADH33_RS12615 (AADH33_12605) | pilC | 3042612..3043835 (+) | 1224 | WP_075101362.1 | type II secretion system F family protein | Machinery gene |
| AADH33_RS12620 (AADH33_12610) | pilD | 3043861..3044763 (+) | 903 | WP_348549109.1 | prepilin peptidase | Machinery gene |
| AADH33_RS12625 (AADH33_12615) | coaE | 3044939..3045625 (+) | 687 | WP_348549110.1 | dephospho-CoA kinase | - |
| AADH33_RS12630 (AADH33_12620) | rlmB | 3045588..3046358 (-) | 771 | WP_100748650.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| AADH33_RS12635 (AADH33_12625) | - | 3046626..3046961 (-) | 336 | WP_075101358.1 | pyrimidine/purine nucleoside phosphorylase | - |
Sequence
Protein
Download Length: 407 a.a. Molecular weight: 44644.47 Da Isoelectric Point: 9.6766
>NTDB_id=976084 AADH33_RS12615 WP_075101362.1 3042612..3043835(+) (pilC) [Psychrobacter sp. KFRI-CH2-11]
MAKAKTDMLSDFVYDGVNRRGQKVKGETTSRSLELAKATLRKQGITVKGIKKKPKPLYTFKKAIKPIDIAIFSRQLATMM
KAGVPLTQSFEIVADSLDNPSMKDLVLQIKSDIESGGTFASALRKHPRYFDDLFCSLVDSGEQSGSLETMLERVATYKEK
SEMLKAKIKKAVKYPIAVIIVAVIVTMILLIKVVPVFSDLFESFGAELPAFTQMVVGMSEWMQSWWFVLIVLIGGAIIGF
SEAKKRSKKFRDFLDRAVLKVPVFGNIAYQAIIARFARTLSTTFAAGVPLIDALDSTAGATNNVVFYNATQQIKNDVSTG
QQLQFSIRSTNLFPSMAIQMVGIGEESGSLEEMLDKVAVYYESEVDNAVDGLTSLMEPMIMAVLGVLVGGLVIAMYLPIF
QMGSVVG
MAKAKTDMLSDFVYDGVNRRGQKVKGETTSRSLELAKATLRKQGITVKGIKKKPKPLYTFKKAIKPIDIAIFSRQLATMM
KAGVPLTQSFEIVADSLDNPSMKDLVLQIKSDIESGGTFASALRKHPRYFDDLFCSLVDSGEQSGSLETMLERVATYKEK
SEMLKAKIKKAVKYPIAVIIVAVIVTMILLIKVVPVFSDLFESFGAELPAFTQMVVGMSEWMQSWWFVLIVLIGGAIIGF
SEAKKRSKKFRDFLDRAVLKVPVFGNIAYQAIIARFARTLSTTFAAGVPLIDALDSTAGATNNVVFYNATQQIKNDVSTG
QQLQFSIRSTNLFPSMAIQMVGIGEESGSLEEMLDKVAVYYESEVDNAVDGLTSLMEPMIMAVLGVLVGGLVIAMYLPIF
QMGSVVG
Nucleotide
Download Length: 1224 bp
>NTDB_id=976084 AADH33_RS12615 WP_075101362.1 3042612..3043835(+) (pilC) [Psychrobacter sp. KFRI-CH2-11]
ATGGCAAAAGCGAAGACCGACATGCTGTCAGACTTTGTCTACGATGGCGTAAACCGGCGCGGACAAAAAGTAAAAGGCGA
GACCACCAGTCGCAGCTTAGAGCTGGCCAAAGCCACTTTGCGCAAACAGGGTATTACGGTTAAGGGCATCAAGAAAAAAC
CTAAGCCGCTTTATACGTTTAAAAAAGCCATTAAACCCATCGATATCGCGATTTTTTCTCGTCAATTGGCCACCATGATG
AAAGCTGGGGTGCCTTTGACGCAGTCTTTTGAAATTGTCGCTGACTCATTAGACAATCCCAGTATGAAAGATTTGGTATT
GCAAATAAAATCTGATATCGAATCTGGTGGAACCTTCGCCTCTGCCCTACGCAAGCATCCGCGCTACTTTGATGACCTGT
TTTGCTCGTTGGTTGATTCTGGTGAGCAATCAGGCTCGCTTGAAACCATGCTCGAGCGGGTGGCTACTTATAAAGAAAAA
AGCGAGATGCTCAAAGCCAAAATCAAAAAAGCGGTCAAATACCCGATTGCCGTTATTATCGTCGCCGTCATCGTGACCAT
GATTTTGCTCATCAAAGTGGTACCCGTGTTCTCTGATCTTTTTGAGTCTTTTGGCGCTGAGCTGCCCGCCTTTACCCAAA
TGGTGGTGGGTATGTCTGAGTGGATGCAGTCATGGTGGTTTGTTTTGATTGTGCTCATCGGCGGCGCCATTATCGGGTTT
TCAGAAGCGAAAAAACGCTCCAAAAAATTCCGTGACTTTTTGGACCGCGCTGTTTTGAAGGTACCTGTATTTGGTAATAT
TGCTTATCAAGCGATTATCGCCCGCTTTGCCCGCACCCTCTCAACGACTTTTGCCGCGGGGGTACCGCTCATCGATGCGC
TGGACTCCACAGCAGGCGCGACCAACAACGTGGTGTTTTATAATGCCACTCAGCAGATCAAAAACGACGTCTCTACCGGT
CAGCAGTTACAGTTTTCGATCCGTTCTACCAATTTATTTCCCAGTATGGCCATACAGATGGTCGGTATTGGTGAGGAGTC
TGGTAGCTTAGAGGAGATGCTAGACAAGGTGGCGGTCTATTATGAAAGCGAAGTCGATAACGCGGTTGATGGCCTGACCA
GTTTGATGGAGCCTATGATTATGGCGGTGCTTGGGGTATTGGTCGGTGGCCTCGTGATTGCGATGTATCTACCGATCTTC
CAAATGGGCTCAGTGGTCGGCTAA
ATGGCAAAAGCGAAGACCGACATGCTGTCAGACTTTGTCTACGATGGCGTAAACCGGCGCGGACAAAAAGTAAAAGGCGA
GACCACCAGTCGCAGCTTAGAGCTGGCCAAAGCCACTTTGCGCAAACAGGGTATTACGGTTAAGGGCATCAAGAAAAAAC
CTAAGCCGCTTTATACGTTTAAAAAAGCCATTAAACCCATCGATATCGCGATTTTTTCTCGTCAATTGGCCACCATGATG
AAAGCTGGGGTGCCTTTGACGCAGTCTTTTGAAATTGTCGCTGACTCATTAGACAATCCCAGTATGAAAGATTTGGTATT
GCAAATAAAATCTGATATCGAATCTGGTGGAACCTTCGCCTCTGCCCTACGCAAGCATCCGCGCTACTTTGATGACCTGT
TTTGCTCGTTGGTTGATTCTGGTGAGCAATCAGGCTCGCTTGAAACCATGCTCGAGCGGGTGGCTACTTATAAAGAAAAA
AGCGAGATGCTCAAAGCCAAAATCAAAAAAGCGGTCAAATACCCGATTGCCGTTATTATCGTCGCCGTCATCGTGACCAT
GATTTTGCTCATCAAAGTGGTACCCGTGTTCTCTGATCTTTTTGAGTCTTTTGGCGCTGAGCTGCCCGCCTTTACCCAAA
TGGTGGTGGGTATGTCTGAGTGGATGCAGTCATGGTGGTTTGTTTTGATTGTGCTCATCGGCGGCGCCATTATCGGGTTT
TCAGAAGCGAAAAAACGCTCCAAAAAATTCCGTGACTTTTTGGACCGCGCTGTTTTGAAGGTACCTGTATTTGGTAATAT
TGCTTATCAAGCGATTATCGCCCGCTTTGCCCGCACCCTCTCAACGACTTTTGCCGCGGGGGTACCGCTCATCGATGCGC
TGGACTCCACAGCAGGCGCGACCAACAACGTGGTGTTTTATAATGCCACTCAGCAGATCAAAAACGACGTCTCTACCGGT
CAGCAGTTACAGTTTTCGATCCGTTCTACCAATTTATTTCCCAGTATGGCCATACAGATGGTCGGTATTGGTGAGGAGTC
TGGTAGCTTAGAGGAGATGCTAGACAAGGTGGCGGTCTATTATGAAAGCGAAGTCGATAACGCGGTTGATGGCCTGACCA
GTTTGATGGAGCCTATGATTATGGCGGTGCTTGGGGTATTGGTCGGTGGCCTCGTGATTGCGATGTATCTACCGATCTTC
CAAATGGGCTCAGTGGTCGGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Acinetobacter baylyi ADP1 |
68.873 |
100 |
0.69 |
| pilC | Acinetobacter baumannii D1279779 |
68.627 |
100 |
0.688 |
| pilC | Pseudomonas stutzeri DSM 10701 |
66.247 |
97.543 |
0.646 |
| pilC | Legionella pneumophila strain ERS1305867 |
57.143 |
98.034 |
0.56 |
| pilG | Neisseria gonorrhoeae MS11 |
44.836 |
97.543 |
0.437 |
| pilG | Neisseria meningitidis 44/76-A |
44.584 |
97.543 |
0.435 |
| pilC | Vibrio cholerae strain A1552 |
42.402 |
100 |
0.425 |
| pilC | Vibrio campbellii strain DS40M4 |
40.494 |
99.509 |
0.403 |