Detailed information NTG0976046

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: WMB06_RS03340
• Genome accession: NZ_CP151275
• Coordinates: 680289..681422 (-)
• Length: 377 a.a.
• NCBI ID: WP_341677667.1
• Uniprot ID: -
• Organism: Niveibacterium sp. SC-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 675289..686422

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WMB06_RS03310 (WMB06_03310)	tpx	675384..675884 (+)	501	WP_341677661.1	thiol peroxidase	-
WMB06_RS03315 (WMB06_03315)	-	676001..676933 (+)	933	WP_341677662.1	carbohydrate kinase family protein	-
WMB06_RS03320 (WMB06_03320)	-	676965..678188 (+)	1224	WP_341677663.1	FAD-dependent monooxygenase	-
WMB06_RS03325 (WMB06_03325)	ftsX	678185..679093 (-)	909	WP_341677664.1	permease-like cell division protein FtsX	-
WMB06_RS03330 (WMB06_03330)	-	679090..679743 (-)	654	WP_341677665.1	ATP-binding cassette domain-containing protein	-
WMB06_RS03335 (WMB06_03335)	-	679740..680258 (-)	519	WP_341677666.1	GNAT family protein	-
WMB06_RS03340 (WMB06_03340)	pilA	680289..681422 (-)	1134	WP_341677667.1	signal recognition particle-docking protein FtsY	Machinery gene
WMB06_RS03345 (WMB06_03345)	rsmD	681601..682140 (+)	540	WP_341677668.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
WMB06_RS03350 (WMB06_03350)	coaD	682140..682631 (+)	492	WP_341677669.1	pantetheine-phosphate adenylyltransferase	-
WMB06_RS03355 (WMB06_03355)	-	682643..682891 (+)	249	WP_341677670.1	YfhL family 4Fe-4S dicluster ferredoxin	-
WMB06_RS03360 (WMB06_03360)	-	683002..684966 (-)	1965	WP_341677671.1	dynamin family protein	-
WMB06_RS03365 (WMB06_03365)	mutM	685110..685922 (-)	813	WP_341677672.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 40317.09 Da
• Isoelectric Point: 5.5908

>NTDB_id=976046 WMB06_RS03340 WP_341677667.1 680289..681422(-) (pilA) [Niveibacterium sp. SC-1]
MFSFFKKDAKDARPDEAPEDKTPAEVPVQAAQAPAAPAVAAASVPEEAPKRSWMDRLRQGLSRTRAQLNAAAGPMLGADV
GDALGGLGGLFSRRKIDEELLEELESTLLTADCGVEATTYLLTELRTRWKRDKLETGEQLRDVLVELLEGLLAPLEQALD
IDRHRPTIIMLAGVNGSGKTTSIGKLAKRFQSQGKSVLLAAGDTFRAAAREQLQEWGRRNDVTVIAQESGDPAAVIFDAV
SAARARGIDIVLADTAGRLPTQLHLMEEIAKVRRVIQKADPTGPHEVLLVLDANIGQNALAQLKAFDKAAGVTGLVVTKL
DGTAKGGVLAAIARTAPKPIRFIGVGEGIDDLQPFVAREFVEALFDLPSRSTNKNTA

Nucleotide

• Length: 1134 bp

>NTDB_id=976046 WMB06_RS03340 WP_341677667.1 680289..681422(-) (pilA) [Niveibacterium sp. SC-1]
ATGTTCAGCTTCTTCAAGAAAGACGCCAAGGACGCCCGTCCCGACGAGGCGCCCGAGGACAAGACGCCCGCAGAGGTGCC
TGTCCAGGCCGCCCAGGCACCCGCCGCGCCCGCAGTCGCTGCGGCCAGCGTGCCGGAGGAAGCGCCCAAGCGCTCCTGGA
TGGATCGCCTGCGCCAGGGCCTCTCGCGCACCCGGGCGCAGCTCAATGCCGCCGCCGGCCCGATGCTGGGCGCGGACGTG
GGCGATGCGCTGGGCGGACTCGGCGGACTCTTCTCGCGCCGCAAGATCGACGAGGAGCTGCTTGAAGAGCTCGAGTCCAC
GCTGCTCACCGCCGACTGCGGCGTCGAGGCCACCACCTACCTGCTGACCGAACTGCGCACGCGCTGGAAGCGCGACAAGC
TGGAAACCGGCGAGCAGTTGCGCGACGTGCTCGTGGAGCTGCTCGAAGGCCTGCTCGCCCCGCTGGAGCAAGCGCTGGAC
ATCGACCGCCACCGCCCCACGATCATCATGCTCGCGGGCGTCAATGGCTCGGGCAAGACGACCTCGATCGGCAAGCTCGC
CAAGCGCTTCCAGTCGCAGGGCAAGAGCGTGCTGCTGGCCGCCGGCGACACCTTCCGCGCTGCGGCCCGCGAACAGCTGC
AGGAATGGGGCCGCCGCAACGACGTCACGGTGATCGCCCAGGAATCCGGCGACCCGGCCGCGGTGATCTTCGACGCCGTC
TCGGCGGCGCGCGCCCGCGGCATCGACATCGTGCTGGCCGACACCGCCGGCCGCCTGCCCACCCAGCTGCACCTGATGGA
AGAAATCGCCAAGGTGCGTCGCGTGATCCAGAAGGCCGACCCCACTGGCCCGCATGAAGTCCTGCTGGTGCTGGACGCCA
ACATCGGCCAGAACGCGCTGGCCCAGCTCAAGGCCTTCGACAAGGCCGCGGGCGTCACGGGCCTGGTGGTCACCAAGCTC
GACGGCACGGCCAAGGGCGGCGTGCTCGCCGCGATCGCGCGCACGGCGCCTAAGCCGATCCGCTTCATCGGGGTGGGCGA
AGGCATCGACGACCTGCAGCCATTCGTCGCGCGCGAATTCGTCGAAGCCCTCTTCGATCTACCCTCCCGCAGCACGAACA
AGAACACGGCCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (166-365)

• SRP54-type protein, helical bundle domain (SRP54_N) (87-146)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	58.523	93.369	0.546