Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   ACM3H0_RS05985 Genome accession   NZ_CP180685
Coordinates   1119014..1120999 (-) Length   661 a.a.
NCBI ID   WP_000141871.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain M14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1114014..1125999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM3H0_RS05965 (ACM3H0_05965) - 1114541..1115926 (+) 1386 WP_000085847.1 PTS transporter subunit EIIC -
  ACM3H0_RS05970 (ACM3H0_05970) - 1116134..1117738 (-) 1605 WP_416055424.1 ABC transporter permease -
  ACM3H0_RS05975 (ACM3H0_05975) pptA 1117742..1118476 (-) 735 WP_000589158.1 ABC transporter ATP-binding protein Regulator
  ACM3H0_RS05980 (ACM3H0_05980) - 1118496..1118801 (-) 306 WP_000711205.1 bacteriocin immunity protein -
  ACM3H0_RS05985 (ACM3H0_05985) recP/tkt 1119014..1120999 (-) 1986 WP_000141871.1 transketolase Machinery gene
  ACM3H0_RS05990 (ACM3H0_05990) - 1121124..1122554 (-) 1431 WP_001217287.1 helix-turn-helix domain-containing protein -
  ACM3H0_RS05995 (ACM3H0_05995) - 1122545..1123882 (-) 1338 WP_000137254.1 NAD(P)/FAD-dependent oxidoreductase -
  ACM3H0_RS06000 (ACM3H0_06000) - 1123970..1124668 (-) 699 WP_000350767.1 MIP/aquaporin family protein -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 71161.80 Da        Isoelectric Point: 4.6219

>NTDB_id=976030 ACM3H0_RS05985 WP_000141871.1 1119014..1120999(-) (recP/tkt) [Streptococcus agalactiae strain M14]
MTFDTIDQLAVNTVRTLSIDAIQAANSGHPGLPMGAAPMAYVLWNKFLNVNPKTSRNWTNRDRFVLSAGHGSALLYSLLH
LAGYDLSIDDLKQFRQWGSKTPGHPEVNHTDGVEATTGPLGQGIANAVGMAMAEAHLAAKFNKPGFDLVDHYTYTLHGDG
CLMEGVSQEAASLAGHLKLGKLVLLYDSNDISLDGPTSQSFTEDVKGRFESYGWQHILVKDGNDLEAIAAAIEAAKAETD
KPTIIEVKTIIGFGAEKQGTSSVHGAPLGAEGITFAKKAYGWEYPDFTVPAEVVARFASDLQARGAKAEEAWNDLFAKYE
VEYPELAAEYKEAFAGQAETVELKAHDLGSSVASRVSSQQAIQQLSTQLPNLWGGSADLSASNNTMVAAETDFQASNYAG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQNLPTVYVMTHDSIAVGEDGPTHEPIEQLASV
RSMPNLNVIRPADGNETNAAWQRAVSETDRPTMLVLTRQNLPVLEGTSELAQEGVNKGAYILSEAKGELDGIIIATGSEV
KLALDTQDKLESEGIHVRVVSMPAQNIFDEQEASYQEQVLPSAVTKRLAIEAGSSFGWGKYVGLNGLTLTIDTWGASAPG
NRIFEEYGFTVENAVSLYKEL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=976030 ACM3H0_RS05985 WP_000141871.1 1119014..1120999(-) (recP/tkt) [Streptococcus agalactiae strain M14]
ATGACATTTGACACCATTGATCAATTAGCGGTTAATACAGTCCGCACGCTTTCTATTGATGCTATCCAAGCAGCAAATTC
TGGGCACCCAGGTCTTCCTATGGGAGCTGCGCCTATGGCTTATGTGCTTTGGAATAAATTCTTAAATGTAAACCCAAAAA
CAAGTCGCAATTGGACAAACCGTGACCGTTTTGTGCTATCAGCTGGGCATGGTTCAGCTCTTCTTTATAGCCTACTTCAT
TTAGCTGGCTATGATTTATCAATTGATGATTTAAAACAATTCCGCCAATGGGGATCAAAAACACCTGGACATCCAGAAGT
TAACCATACTGATGGTGTAGAAGCAACAACTGGACCTTTAGGGCAAGGTATTGCTAATGCTGTTGGTATGGCAATGGCTG
AAGCTCATTTGGCTGCTAAATTTAATAAACCAGGCTTTGATTTAGTTGATCATTACACTTATACACTTCATGGTGATGGT
TGTTTGATGGAGGGTGTTAGCCAAGAAGCTGCCAGTCTTGCTGGACACTTAAAACTTGGTAAATTGGTCCTTCTTTATGA
TTCAAATGATATCTCACTTGATGGTCCAACGTCTCAATCATTTACAGAAGATGTTAAAGGGCGTTTTGAATCATATGGTT
GGCAACATATCTTAGTTAAAGATGGTAATGATTTAGAAGCGATTGCTGCAGCAATTGAAGCTGCTAAAGCTGAAACTGAT
AAACCAACCATTATTGAAGTTAAAACTATTATTGGATTTGGCGCAGAGAAACAGGGAACATCTTCAGTTCATGGAGCGCC
ACTTGGTGCAGAAGGTATTACTTTTGCCAAGAAGGCTTATGGATGGGAATATCCAGACTTTACTGTTCCTGCTGAAGTTG
TAGCTCGATTTGCCTCAGATCTTCAAGCGCGTGGTGCGAAGGCAGAAGAGGCATGGAATGATCTTTTTGCTAAATATGAA
GTTGAGTATCCAGAATTAGCAGCTGAATACAAAGAAGCTTTTGCTGGCCAAGCTGAGACAGTTGAATTGAAAGCTCATGA
CCTAGGTTCATCAGTGGCTAGTCGTGTTTCAAGCCAACAAGCTATTCAACAATTATCGACTCAATTACCGAACCTCTGGG
GAGGGTCAGCAGACCTCTCAGCTTCTAATAACACAATGGTAGCAGCAGAAACAGATTTCCAAGCAAGTAATTACGCTGGG
CGTAACATTTGGTTTGGTGTACGTGAATTTGCAATGGCTGCTGCAATGAATGGAATTGCGCTTCACGGTGGGACTCGTGT
TTATGGGGGTACATTCTTTGTCTTCTCAAACTACTTGTTACCAGCAGTACGTATGGCTGCACTTCAAAACTTGCCAACTG
TCTATGTTATGACACATGATTCTATTGCTGTTGGAGAAGATGGGCCAACTCATGAGCCAATAGAACAATTAGCATCAGTG
CGCTCAATGCCTAATTTGAACGTTATCCGTCCCGCAGACGGTAATGAAACAAACGCTGCATGGCAACGAGCTGTATCAGA
GACAGATCGACCAACGATGCTTGTTTTAACACGTCAAAACTTACCAGTTCTTGAAGGAACATCAGAATTAGCCCAAGAAG
GGGTTAATAAAGGTGCTTATATTTTATCAGAAGCTAAAGGTGAACTTGATGGTATCATCATTGCAACAGGTTCAGAAGTT
AAATTAGCTTTAGATACTCAAGACAAACTTGAGTCAGAGGGCATCCATGTTCGCGTCGTATCTATGCCAGCACAAAACAT
TTTTGATGAACAAGAGGCTTCATATCAAGAGCAAGTGCTTCCATCAGCTGTTACAAAACGTCTTGCTATTGAGGCAGGAT
CAAGCTTCGGTTGGGGTAAATATGTTGGTTTAAATGGGCTAACACTTACTATTGATACTTGGGGAGCATCAGCACCAGGT
AACAGAATTTTCGAAGAGTATGGCTTTACAGTTGAGAATGCTGTATCGCTATATAAAGAACTTTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)

Transketolase, C-terminal domain (Transketolase_C)

(552-652)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.079

99.546

0.558