Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   R8775_RS08745 Genome accession   NZ_AP026915
Coordinates   1689929..1690855 (-) Length   308 a.a.
NCBI ID   WP_000103700.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700005     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1684929..1695855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8775_RS08725 - 1685599..1686476 (-) 878 Protein_1729 ABC transporter permease -
  R8775_RS08730 - 1686488..1687297 (-) 810 Protein_1730 ABC transporter substrate-binding protein -
  R8775_RS08735 (PC0005_17270) amiF 1687916..1688842 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  R8775_RS08740 (PC0005_17280) amiE 1688853..1689920 (-) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  R8775_RS08745 (PC0005_17290) amiD 1689929..1690855 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  R8775_RS08750 (PC0005_17300) amiC 1690855..1692351 (-) 1497 WP_000759907.1 ABC transporter permease Regulator
  R8775_RS08755 (PC0005_17310) amiA3 1692418..1694397 (-) 1980 WP_000742233.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34634.76 Da        Isoelectric Point: 9.7939

>NTDB_id=97581 R8775_RS08745 WP_000103700.1 1689929..1690855(-) (amiD) [Streptococcus pneumoniae strain PZ900700005]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWKSVFKQFMKKKSTVVMLGILVAIILISFIYPMFSKFDFNDVSKVNDFSVR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPPLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=97581 R8775_RS08745 WP_000103700.1 1689929..1690855(-) (amiD) [Streptococcus pneumoniae strain PZ900700005]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAACTATTGATGCGCCAGCATA
TTCTTACTGGAAATCAGTGTTTAAACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCCATCA
TTTTGATAAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAACGACTTTAGTGTTCGT
TATATCAAGCCAAATGCGGAGCATTGGTTCGGTACTGACAGTAACGGTAAATCGCTCTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCCATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGTA
TTTCAAAATCAGTTGACCGTGTCATGATGGAAGTTTACAACGTCATCTCAAACATCCCACCTCTTTTGATTGTTATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCCATGAGCGTAACAACATGGATTGGTATTGCCTTCAT
GATCCGTGTGCAAATCTTGCGCTATCGTGACTTGGAATACAACTTGGCGTCACGTACTTTGGGAACACCAACCTTGAAGA
TTGTTGCCAAAAATATCATGCCTCAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCTTTCTTCGGTCTTGGATTACCGATTACAGTGCCAAGTTTGGGTCGTTTGATTTCGGATTATTC
ACAAAACGTAACAACCAATGCTTACTTGTTCTGGATTCCATTGACAACCCTTGTCTTGGTATCCTTGTCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.117

100

0.831
  amiD Streptococcus thermophilus LMG 18311

81.169

100

0.812
  amiD Streptococcus thermophilus LMD-9

81.169

100

0.812

Multiple sequence alignment