Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   AADP84_RS02460 Genome accession   NZ_CP151186
Coordinates   539334..539903 (+) Length   189 a.a.
NCBI ID   WP_031787939.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain Dubai-25     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 534334..544903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADP84_RS02435 (AADP84_02435) cysE 535547..536194 (+) 648 WP_072291959.1 serine O-acetyltransferase -
  AADP84_RS02440 (AADP84_02440) cysS 536178..537578 (+) 1401 WP_031787937.1 cysteine--tRNA ligase -
  AADP84_RS02445 (AADP84_02445) - 537571..537975 (+) 405 WP_031787938.1 Mini-ribonuclease 3 -
  AADP84_RS02450 (AADP84_02450) rlmB 537983..538729 (+) 747 WP_000390335.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  AADP84_RS02455 (AADP84_02455) - 538729..539253 (+) 525 WP_000664733.1 NYN domain-containing protein -
  AADP84_RS02460 (AADP84_02460) sigH 539334..539903 (+) 570 WP_031787939.1 RNA polymerase sigma factor Regulator
  AADP84_RS02465 (AADP84_02465) rpmG 540019..540162 (+) 144 WP_014373786.1 50S ribosomal protein L33 -
  AADP84_RS02470 (AADP84_02470) secE 540218..540400 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  AADP84_RS02475 (AADP84_02475) nusG 540413..540961 (+) 549 WP_001288299.1 transcription termination/antitermination protein NusG -
  AADP84_RS02480 (AADP84_02480) rplK 541142..541564 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  AADP84_RS02485 (AADP84_02485) rplA 541772..542464 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  AADP84_RS02490 (AADP84_02490) rplJ 542736..543236 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  AADP84_RS02495 (AADP84_02495) rplL 543280..543648 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  AADP84_RS02500 (AADP84_02500) - 543836..544444 (+) 609 WP_031787940.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23045.10 Da        Isoelectric Point: 9.7629

>NTDB_id=975740 AADP84_RS02460 WP_031787939.1 539334..539903(+) (sigH) [Staphylococcus argenteus strain Dubai-25]
MKRCISVHNNVKKHSNIVDENEFEKLITDLKPLIIRRMKRFGFKYHDLEDLYQEILIKIYRATKTFDFKGEQPFVNYVQC
LITSVKYDYLRKCLASSRRMDSLVNEYKVIYPCALKYHDIERNYLNKLNVRELICQFKYLSAFEKEVMYFICDQYKPREI
AQLMNVKEKTIYNAIQRCKSKIRQHFKMF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=975740 AADP84_RS02460 WP_031787939.1 539334..539903(+) (sigH) [Staphylococcus argenteus strain Dubai-25]
TTGAAAAGATGTATATCAGTGCATAATAATGTTAAAAAACACAGCAATATAGTTGACGAGAATGAATTTGAAAAGTTAAT
AACAGATTTGAAACCATTAATCATTCGACGTATGAAAAGGTTTGGTTTTAAATACCATGATTTGGAAGATTTATATCAAG
AGATACTAATAAAGATATATAGGGCAACTAAAACATTCGATTTTAAAGGTGAGCAACCATTCGTGAATTATGTTCAATGT
TTAATCACTTCAGTTAAATACGATTACCTAAGGAAGTGTTTAGCATCTTCTAGAAGAATGGATAGTTTAGTAAATGAATA
TAAAGTTATATATCCTTGTGCATTAAAGTATCATGACATTGAAAGAAACTATTTAAATAAACTGAATGTCAGAGAGTTGA
TTTGTCAATTTAAATATTTAAGTGCATTTGAAAAAGAAGTAATGTATTTTATATGCGACCAATATAAACCAAGAGAGATT
GCCCAATTGATGAATGTTAAAGAAAAAACTATTTATAATGCAATTCAACGGTGTAAAAGTAAAATAAGACAGCATTTTAA
AATGTTTTAA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

68.617

99.471

0.683
  sigH Staphylococcus aureus MW2

67.553

99.471

0.672

Multiple sequence alignment