Detailed information NTG0975620

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AABD52_RS21210
• Genome accession: NZ_CP151170
• Coordinates: 4298555..4299355 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain CRKP331
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4293555..4304355

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABD52_RS21175 (AABD52_21175)	gspH	4293711..4294226 (+)	516	WP_004213437.1	type II secretion system minor pseudopilin GspH	-
AABD52_RS21180 (AABD52_21180)	gspI	4294223..4294588 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AABD52_RS21185 (AABD52_21185)	gspJ	4294585..4295181 (+)	597	WP_004222700.1	type II secretion system minor pseudopilin GspJ	-
AABD52_RS21190 (AABD52_21190)	gspK	4295178..4296164 (+)	987	WP_004222697.1	type II secretion system minor pseudopilin GspK	-
AABD52_RS21195 (AABD52_21195)	gspL	4296151..4297344 (+)	1194	WP_341545266.1	type II secretion system protein GspL	-
AABD52_RS21200 (AABD52_21200)	-	4297337..4297822 (+)	486	WP_004151943.1	type II secretion system protein M	-
AABD52_RS21205 (AABD52_21205)	-	4297812..4298558 (+)	747	WP_341545267.1	type II secretion system protein N	-
AABD52_RS21210 (AABD52_21210)	pilD	4298555..4299355 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
AABD52_RS21215 (AABD52_21215)	hrpB	4299403..4301832 (-)	2430	WP_341545268.1	ATP-dependent helicase HrpB	-
AABD52_RS21220 (AABD52_21220)	thpR	4301905..4302441 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
AABD52_RS21225 (AABD52_21225)	sfsA	4302441..4303157 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AABD52_RS21230 (AABD52_21230)	dksA	4303320..4303775 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=975620 AABD52_RS21210 WP_004145898.1 4298555..4299355(+) (pilD) [Klebsiella pneumoniae strain CRKP331]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=975620 AABD52_RS21210 WP_004145898.1 4298555..4299355(+) (pilD) [Klebsiella pneumoniae strain CRKP331]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTACTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425