Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   AAC899_RS02990 Genome accession   NZ_CP151168
Coordinates   639295..639813 (-) Length   172 a.a.
NCBI ID   WP_151795104.1    Uniprot ID   -
Organism   Acinetobacter soli strain HY24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 634295..644813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC899_RS02965 (AAC899_02965) - 635118..635936 (+) 819 WP_218262166.1 copper resistance protein B -
  AAC899_RS02970 (AAC899_02970) - 636007..636948 (+) 942 WP_151796155.1 hypothetical protein -
  AAC899_RS02975 (AAC899_02975) - 637093..637410 (+) 318 WP_004934921.1 multidrug efflux SMR transporter -
  AAC899_RS02980 (AAC899_02980) - 637426..637872 (-) 447 WP_218262167.1 VOC family protein -
  AAC899_RS02985 (AAC899_02985) - 638005..639180 (-) 1176 WP_218262168.1 thiolase family protein -
  AAC899_RS02990 (AAC899_02990) fimT 639295..639813 (-) 519 WP_151795104.1 GspH/FimT family pseudopilin Machinery gene
  AAC899_RS02995 (AAC899_02995) omp38 640200..641252 (+) 1053 WP_004934932.1 outer membrane protein Omp38 -
  AAC899_RS03000 (AAC899_03000) - 641336..641506 (-) 171 WP_171250470.1 hypothetical protein -
  AAC899_RS03005 (AAC899_03005) - 641643..643106 (-) 1464 WP_004934936.1 amino acid permease -
  AAC899_RS03010 (AAC899_03010) - 643116..644141 (-) 1026 WP_218262170.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19521.37 Da        Isoelectric Point: 8.8372

>NTDB_id=975574 AAC899_RS02990 WP_151795104.1 639295..639813(-) (fimT) [Acinetobacter soli strain HY24]
MNNNFLGFSLIEFIVTLTVLSILIGVGVPTYQHVMATQEANHIPRTLTIHIQKAKSDAVLYRHNVVLCPSIDKQTCSDDW
SKGFIVFLDQNRNRQRDINEDLLSSTDWNTRYGMLSWKGTLQSNHLMFRAASGLPIGSNGSFYYCSQKVSHKRLVISRMG
HFRVETLADCPT

Nucleotide


Download         Length: 519 bp        

>NTDB_id=975574 AAC899_RS02990 WP_151795104.1 639295..639813(-) (fimT) [Acinetobacter soli strain HY24]
ATGAATAACAATTTTTTAGGTTTTAGTTTAATTGAATTTATCGTTACCCTCACGGTTTTAAGCATTTTAATTGGTGTCGG
AGTACCGACTTATCAGCATGTTATGGCGACTCAAGAAGCCAACCACATTCCAAGAACACTCACAATTCACATACAAAAAG
CAAAGTCCGATGCGGTGCTGTATCGTCATAACGTTGTGCTTTGCCCGAGTATAGACAAGCAAACCTGTAGCGATGACTGG
AGCAAGGGCTTTATTGTATTTTTAGATCAAAACCGTAACCGGCAGCGAGATATCAATGAAGATCTGCTATCGAGTACAGA
CTGGAATACCCGTTATGGCATGCTGTCTTGGAAAGGCACTTTGCAATCTAACCATTTGATGTTTCGGGCCGCAAGTGGCT
TGCCAATCGGATCAAATGGAAGCTTTTATTATTGTTCGCAAAAAGTCAGTCATAAACGTCTGGTGATCAGCCGCATGGGG
CACTTTCGTGTCGAAACCCTTGCCGACTGCCCAACATGA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(50-160)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

63.529

98.837

0.628

Multiple sequence alignment