Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AAC899_RS01800 Genome accession   NZ_CP151168
Coordinates   405551..406207 (-) Length   218 a.a.
NCBI ID   WP_048763050.1    Uniprot ID   A0A0M1I800
Organism   Acinetobacter soli strain HY24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 400551..411207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC899_RS01765 (AAC899_01765) mlaE 400960..401736 (+) 777 WP_004934483.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  AAC899_RS01770 (AAC899_01770) - 401736..402404 (+) 669 WP_004934486.1 outer membrane lipid asymmetry maintenance protein MlaD -
  AAC899_RS01775 (AAC899_01775) - 402423..403055 (+) 633 WP_004934488.1 ABC transporter substrate-binding protein -
  AAC899_RS01780 (AAC899_01780) - 403068..403355 (+) 288 WP_025095677.1 STAS domain-containing protein -
  AAC899_RS01785 (AAC899_01785) - 403401..404414 (-) 1014 WP_104123876.1 CorA family divalent cation transporter -
  AAC899_RS01790 (AAC899_01790) - 404572..405156 (+) 585 WP_025095676.1 TIGR00730 family Rossman fold protein -
  AAC899_RS01795 (AAC899_01795) - 405126..405599 (+) 474 WP_171497686.1 NUDIX domain-containing protein -
  AAC899_RS01800 (AAC899_01800) comF 405551..406207 (-) 657 WP_048763050.1 ComF family protein Machinery gene
  AAC899_RS01805 (AAC899_01805) recG 406194..408239 (-) 2046 WP_218261926.1 ATP-dependent DNA helicase RecG -
  AAC899_RS01810 (AAC899_01810) - 408263..409090 (+) 828 WP_048763049.1 NAD(P)H-binding protein -
  AAC899_RS01815 (AAC899_01815) - 409208..410197 (+) 990 WP_317657574.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24989.13 Da        Isoelectric Point: 8.8756

>NTDB_id=975571 AAC899_RS01800 WP_048763050.1 405551..406207(-) (comF) [Acinetobacter soli strain HY24]
MPMFKAVYHSLHTLWQHTRHCPLCGHSAAHSPYVICTDCWQDLPWLNDSVLRHELNIQAACEYADPINQIVQQFKYHEKL
HHQRLLTQLILQLPLPRVQAIVPMPISTARLCERGYNQAMLIAEGVAKQLNLPIWQPVLRRAEHTQKGLSRLERIAGIEQ
QFVPDLRVRTRFRRVMIIDDVVTTGSSIYALSQALTTLGCQRIYPICVAAASVSREAR

Nucleotide


Download         Length: 657 bp        

>NTDB_id=975571 AAC899_RS01800 WP_048763050.1 405551..406207(-) (comF) [Acinetobacter soli strain HY24]
ATGCCTATGTTTAAGGCAGTGTATCATTCATTACACACGCTCTGGCAGCACACGCGACATTGTCCGCTGTGCGGTCATTC
TGCCGCACACAGTCCATACGTCATTTGCACAGATTGCTGGCAAGATCTGCCGTGGCTCAATGATTCGGTGCTGCGCCATG
AATTGAACATTCAGGCGGCATGTGAATATGCCGACCCGATCAATCAGATTGTGCAGCAATTTAAATACCATGAAAAACTG
CATCATCAGCGCTTACTCACACAACTGATTTTGCAACTTCCCTTACCGCGGGTTCAGGCCATTGTGCCAATGCCGATTTC
GACAGCGCGGCTTTGTGAACGTGGTTATAATCAAGCGATGCTGATTGCTGAAGGTGTCGCCAAACAGCTTAACCTTCCCA
TATGGCAACCCGTGCTGCGTCGGGCTGAACACACACAAAAGGGCTTAAGCCGATTAGAGCGCATCGCGGGTATTGAGCAG
CAATTCGTACCCGATTTGCGTGTGCGCACTCGCTTTCGGCGGGTCATGATTATCGATGATGTGGTCACGACAGGCAGCTC
AATTTACGCCTTGTCTCAAGCACTCACCACATTAGGATGCCAACGCATTTATCCGATCTGTGTCGCTGCGGCCTCTGTTT
CACGTGAAGCCAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1I800

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

54.286

96.33

0.523
  comF Acinetobacter baumannii D1279779

54.286

96.33

0.523

Multiple sequence alignment