Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AAC899_RS01460 Genome accession   NZ_CP151168
Coordinates   336836..337270 (+) Length   144 a.a.
NCBI ID   WP_055414914.1    Uniprot ID   -
Organism   Acinetobacter soli strain HY24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 331836..342270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC899_RS01450 (AAC899_01450) comC 331936..336297 (+) 4362 WP_343316464.1 PilC/PilY family type IV pilus protein Machinery gene
  AAC899_RS01455 (AAC899_01455) comE 336363..336836 (+) 474 WP_119689994.1 type IV pilin protein Machinery gene
  AAC899_RS01460 (AAC899_01460) comF 336836..337270 (+) 435 WP_055414914.1 type IV pilin protein Machinery gene
  AAC899_RS01465 (AAC899_01465) rpsP 337412..337669 (+) 258 WP_004934313.1 30S ribosomal protein S16 -
  AAC899_RS01470 (AAC899_01470) rimM 337687..338235 (+) 549 WP_317657585.1 ribosome maturation factor RimM -
  AAC899_RS01475 (AAC899_01475) trmD 338284..339018 (+) 735 WP_343316465.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  AAC899_RS01480 (AAC899_01480) rplS 339228..339599 (+) 372 WP_004934323.1 50S ribosomal protein L19 -
  AAC899_RS01485 (AAC899_01485) - 339666..340637 (-) 972 WP_048764474.1 triacylglycerol lipase -
  AAC899_RS01490 (AAC899_01490) - 340769..341806 (-) 1038 WP_004934331.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15411.46 Da        Isoelectric Point: 8.4259

>NTDB_id=975570 AAC899_RS01460 WP_055414914.1 336836..337270(+) (comF) [Acinetobacter soli strain HY24]
MQAKQGFTLIELMIVVAVIGILAAIAYPSYQNYKIRVNRGEVQAELIRVAQQLQSYKVVNRSYANASLSGLGITSNFPAT
GTAFYTLGLTLDTDNQGYVLTATPNASTMQAGNGIVCLNQDGQKYWAKGSSSCSLSSASDWDGK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=975570 AAC899_RS01460 WP_055414914.1 336836..337270(+) (comF) [Acinetobacter soli strain HY24]
ATGCAAGCAAAGCAAGGATTTACCTTAATTGAGCTGATGATTGTGGTGGCAGTCATTGGGATTCTGGCGGCAATTGCCTA
TCCGAGTTATCAGAATTATAAAATACGAGTGAATCGCGGTGAGGTTCAGGCCGAGCTGATTCGTGTGGCGCAGCAATTAC
AAAGTTATAAAGTGGTGAATCGGAGTTATGCCAATGCTTCACTCAGCGGTTTGGGTATTACATCGAATTTTCCGGCTACA
GGAACAGCATTTTATACATTAGGATTAACGCTCGATACCGATAATCAGGGCTATGTGCTGACGGCAACACCCAATGCATC
AACGATGCAGGCCGGAAATGGTATTGTATGTTTGAATCAGGATGGACAAAAGTACTGGGCCAAAGGCAGCAGCAGTTGCA
GCTTGAGTAGCGCCTCGGACTGGGATGGAAAATAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

75.694

100

0.757
  pilE Acinetobacter baumannii D1279779

52.518

96.528

0.507
  pilA Pseudomonas aeruginosa PAK

35.032

100

0.382

Multiple sequence alignment