Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   AAC899_RS01440 Genome accession   NZ_CP151168
Coordinates   330285..331253 (+) Length   322 a.a.
NCBI ID   WP_025095722.1    Uniprot ID   -
Organism   Acinetobacter soli strain HY24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 325285..336253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC899_RS01415 (AAC899_01415) rpoZ 327125..327406 (-) 282 WP_004934284.1 DNA-directed RNA polymerase subunit omega -
  AAC899_RS01420 (AAC899_01420) gmk 327475..328098 (-) 624 WP_004945015.1 guanylate kinase -
  AAC899_RS01425 (AAC899_01425) ispH 328234..329184 (+) 951 WP_004934289.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AAC899_RS01430 (AAC899_01430) - 329305..329751 (+) 447 WP_111811938.1 GspH/FimT family pseudopilin -
  AAC899_RS01435 (AAC899_01435) pilV 329748..330284 (+) 537 WP_025095723.1 type IV pilus modification protein PilV Machinery gene
  AAC899_RS01440 (AAC899_01440) comB 330285..331253 (+) 969 WP_025095722.1 PilW family protein Machinery gene
  AAC899_RS01445 (AAC899_01445) pilX 331250..331918 (+) 669 WP_025095721.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34836.45 Da        Isoelectric Point: 8.3453

>NTDB_id=975566 AAC899_RS01440 WP_025095722.1 330285..331253(+) (comB) [Acinetobacter soli strain HY24]
MTRLHQAGFTLIELMVAITLGLLITAAAIQLYLTSVTSFNVQKAMSNIQDSASFGVNYILDDVRKANLSASSAYINDQQA
NAGLLLTASNVSDQVSGKYLLTLAETALTKSAVGDSNVDQKSDQLTIRYQATQSDYDCTGKTLAAGTYVAQRYFVGSDKA
LRCVADQYMRNGNTITAVDGKPKTTLDLSGAGQIIIPSVDYMRIKVGYVKGALNNPTALNYVSVADYLDTAKTPAMTKNI
DGISQQIKPYINVIQIGLLVQSNETAGNDVNVRNRNKKTFDVLGQSVALNSTNQDTRLRQVVTQTISLRNAMGWVEEGYV
TQ

Nucleotide


Download         Length: 969 bp        

>NTDB_id=975566 AAC899_RS01440 WP_025095722.1 330285..331253(+) (comB) [Acinetobacter soli strain HY24]
ATGACCCGATTACATCAGGCTGGATTTACACTGATTGAACTCATGGTGGCCATTACGCTGGGGCTTTTGATTACAGCGGC
AGCTATTCAGCTGTACCTCACCAGTGTCACCAGTTTTAATGTGCAAAAAGCCATGTCGAATATTCAAGACAGTGCCAGTT
TTGGGGTGAACTACATTTTAGATGATGTTCGAAAAGCCAACTTGAGCGCATCCTCTGCATATATCAACGATCAACAAGCA
AATGCGGGATTGCTTCTGACTGCAAGTAACGTCAGTGATCAAGTGAGTGGAAAATACTTATTAACGCTTGCCGAGACGGC
ACTGACTAAAAGCGCAGTTGGAGACAGTAATGTCGATCAAAAAAGTGATCAGCTTACGATTCGTTATCAGGCAACGCAAA
GCGACTATGACTGTACCGGCAAAACCCTTGCCGCAGGCACCTATGTGGCTCAGCGATATTTTGTTGGTAGTGACAAAGCG
TTGCGCTGTGTGGCCGATCAATATATGCGAAATGGAAACACGATAACCGCAGTAGATGGCAAGCCAAAAACCACACTGGA
TTTGTCTGGCGCGGGGCAAATTATTATTCCCTCGGTCGATTATATGCGCATTAAAGTGGGTTATGTGAAAGGCGCTTTGA
ATAATCCAACAGCGCTCAATTACGTGTCTGTGGCAGATTATCTCGACACCGCAAAAACACCCGCAATGACCAAAAATATT
GATGGTATCTCACAGCAAATCAAGCCATACATCAATGTGATTCAAATTGGCTTACTGGTGCAGTCAAATGAAACAGCAGG
CAATGATGTAAACGTTAGAAATCGTAATAAAAAGACTTTTGATGTGTTGGGGCAGTCGGTTGCATTAAACAGTACAAATC
AAGATACACGATTGCGTCAGGTAGTGACTCAGACCATTTCATTAAGAAATGCCATGGGTTGGGTAGAAGAGGGGTATGTC
ACACAATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(153-310)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Acinetobacter baylyi ADP1

78.233

98.447

0.77

Multiple sequence alignment