Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   R8775_RS02635 Genome accession   NZ_AP026915
Coordinates   500210..500941 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700005     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 495210..505941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8775_RS02605 (PC0005_05080) dnaK 495227..497050 (+) 1824 WP_044792889.1 molecular chaperone DnaK -
  R8775_RS02610 (PC0005_05090) - 497063..497416 (+) 354 WP_000115730.1 hypothetical protein -
  R8775_RS02615 (PC0005_05100) dnaJ 497621..498757 (+) 1137 WP_001836079.1 molecular chaperone DnaJ -
  R8775_RS02620 - 499079..499273 (-) 195 WP_001808905.1 hypothetical protein -
  R8775_RS02625 (PC0005_05110) - 499435..499722 (-) 288 WP_000777753.1 hypothetical protein -
  R8775_RS02630 (PC0005_05120) - 499732..500142 (-) 411 WP_001278304.1 HIT family protein -
  R8775_RS02635 (PC0005_05130) pptA 500210..500941 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  R8775_RS02640 (PC0005_05140) - 500938..501987 (+) 1050 WP_000653751.1 ABC transporter permease -
  R8775_RS02645 (PC0005_05150) - 502155..502484 (-) 330 WP_000132572.1 hypothetical protein -
  R8775_RS02650 (PC0005_05160) - 502761..503099 (+) 339 WP_044792896.1 LytTR family DNA-binding domain-containing protein -
  R8775_RS02655 (PC0005_05170) comE/blpR 503104..503841 (+) 738 WP_001219137.1 LytTR family DNA-binding domain-containing protein Regulator
  R8775_RS02660 (PC0005_05180) - 503855..505195 (+) 1341 WP_001099893.1 sensor histidine kinase -
  R8775_RS02665 (PC0005_05190) blpC 505239..505394 (-) 156 WP_000358811.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=97550 R8775_RS02635 WP_000889923.1 500210..500941(+) (pptA) [Streptococcus pneumoniae strain PZ900700005]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=97550 R8775_RS02635 WP_000889923.1 500210..500941(+) (pptA) [Streptococcus pneumoniae strain PZ900700005]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAAAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment