Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   UXQ48_RS10280 Genome accession   NZ_CP151138
Coordinates   2097327..2097722 (-) Length   131 a.a.
NCBI ID   WP_341532654.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BSN164     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2092327..2102722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UXQ48_RS10255 (UXQ48_10255) thiE 2092926..2093567 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  UXQ48_RS10260 (UXQ48_10260) thiM 2093569..2094360 (-) 792 WP_001108483.1 hydroxyethylthiazole kinase -
  UXQ48_RS10265 (UXQ48_10265) thiD 2094344..2095174 (-) 831 WP_000594954.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  UXQ48_RS10270 (UXQ48_10270) tenA 2095167..2095856 (-) 690 WP_000396077.1 thiaminase II -
  UXQ48_RS10275 (UXQ48_10275) sceD 2096243..2096938 (-) 696 WP_000752005.1 lytic transglycosylase SceD -
  UXQ48_RS10280 (UXQ48_10280) ssb 2097327..2097722 (-) 396 WP_341532654.1 single-stranded DNA-binding protein Machinery gene
  UXQ48_RS10285 (UXQ48_10285) - 2097916..2098356 (+) 441 WP_000846746.1 YwpF-like family protein -
  UXQ48_RS10290 (UXQ48_10290) fabZ 2098414..2098854 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  UXQ48_RS10295 (UXQ48_10295) murA 2098888..2100153 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  UXQ48_RS10300 (UXQ48_10300) - 2100264..2100497 (-) 234 WP_000384523.1 DUF1146 family protein -
  UXQ48_RS10305 (UXQ48_10305) - 2100629..2100721 (-) 93 WP_001790611.1 hypothetical protein -
  UXQ48_RS10310 (UXQ48_10310) - 2101059..2101463 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15041.11 Da        Isoelectric Point: 6.2294

>NTDB_id=975285 UXQ48_RS10280 WP_341532654.1 2097327..2097722(-) (ssb) [Staphylococcus aureus strain BSN164]
MLNKIVIVGRLTKDAQIFEKENRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=975285 UXQ48_RS10280 WP_341532654.1 2097327..2097722(-) (ssb) [Staphylococcus aureus strain BSN164]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGAATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985

Multiple sequence alignment