Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   UXQ43_RS07520 Genome accession   NZ_CP151127
Coordinates   1572300..1572986 (-) Length   228 a.a.
NCBI ID   WP_072468915.1    Uniprot ID   A0A5F0HFN7
Organism   Staphylococcus aureus strain BSN158     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1567300..1577986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UXQ43_RS07500 (UXQ43_07500) rpsT 1568214..1568465 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  UXQ43_RS07505 (UXQ43_07505) holA 1568510..1569484 (-) 975 WP_160190523.1 DNA polymerase III subunit delta -
  UXQ43_RS07510 (UXQ43_07510) comEC 1569541..1571742 (-) 2202 WP_001622275.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  UXQ43_RS07515 (UXQ43_07515) - 1571747..1572208 (-) 462 WP_000439693.1 ComE operon protein 2 -
  UXQ43_RS07520 (UXQ43_07520) comEA 1572300..1572986 (-) 687 WP_072468915.1 ComEA family DNA-binding protein Machinery gene
  UXQ43_RS07525 (UXQ43_07525) - 1573026..1573742 (-) 717 WP_000084840.1 class I SAM-dependent methyltransferase -
  UXQ43_RS07530 (UXQ43_07530) rsfS 1573745..1574098 (-) 354 WP_001088020.1 ribosome silencing factor -
  UXQ43_RS07535 (UXQ43_07535) yqeK 1574099..1574683 (-) 585 WP_001017837.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  UXQ43_RS07540 (UXQ43_07540) nadD 1574673..1575242 (-) 570 WP_000725165.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  UXQ43_RS07545 (UXQ43_07545) yhbY 1575245..1575535 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  UXQ43_RS07550 (UXQ43_07550) aroE 1575539..1576345 (-) 807 WP_341532556.1 shikimate dehydrogenase -
  UXQ43_RS07555 (UXQ43_07555) yqeH 1576359..1577459 (-) 1101 WP_001280146.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25812.41 Da        Isoelectric Point: 9.3305

>NTDB_id=975186 UXQ43_RS07520 WP_072468915.1 1572300..1572986(-) (comEA) [Staphylococcus aureus strain BSN158]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQAKDGDNSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGENSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=975186 UXQ43_RS07520 WP_072468915.1 1572300..1572986(-) (comEA) [Staphylococcus aureus strain BSN158]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGCCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACACCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGAAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5F0HFN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment