Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   R8474_RS09140 Genome accession   NZ_AP026914
Coordinates   1805584..1806621 (-) Length   345 a.a.
NCBI ID   WP_000727277.1    Uniprot ID   A0A0B7LHQ0
Organism   Streptococcus pneumoniae strain PZ900700003     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1800584..1811621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8474_RS09115 (PC0003_17930) - 1801323..1802654 (-) 1332 WP_317641883.1 hemolysin family protein -
  R8474_RS09120 (PC0003_17940) endA 1802945..1803769 (-) 825 WP_001036775.1 DNA-entry nuclease EndA Machinery gene
  R8474_RS09125 (PC0003_17950) - 1803808..1803996 (-) 189 WP_001812859.1 DNA-directed RNA polymerase subunit beta -
  R8474_RS09130 (PC0003_17960) murA 1803989..1805272 (-) 1284 WP_000358027.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  R8474_RS09135 (PC0003_17970) - 1805296..1805526 (-) 231 WP_000250392.1 DUF1146 family protein -
  R8474_RS09140 (PC0003_17980) sepM 1805584..1806621 (-) 1038 WP_000727277.1 SepM family pheromone-processing serine protease Regulator
  R8474_RS09145 (PC0003_17990) coaD 1806605..1807093 (-) 489 WP_050221168.1 pantetheine-phosphate adenylyltransferase -
  R8474_RS09150 (PC0003_18000) rsmD 1807083..1807622 (-) 540 WP_000706963.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  R8474_RS09155 (PC0003_18010) asnA 1807687..1808679 (-) 993 WP_000747993.1 aspartate--ammonia ligase -
  R8474_RS09160 (PC0003_18020) - 1808791..1809474 (-) 684 WP_001016910.1 Bax inhibitor-1/YccA family protein -
  R8474_RS09165 (PC0003_18030) - 1809530..1810270 (-) 741 WP_000152678.1 RNA methyltransferase -
  R8474_RS09170 (PC0003_18040) - 1810304..1810582 (+) 279 WP_001174612.1 acylphosphatase -
  R8474_RS09175 (PC0003_18050) yidC 1810660..1811586 (+) 927 WP_000835957.1 membrane protein insertase YidC -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 37537.57 Da        Isoelectric Point: 5.0724

>NTDB_id=97515 R8474_RS09140 WP_000727277.1 1805584..1806621(-) (sepM) [Streptococcus pneumoniae strain PZ900700003]
MKKKIRWPLYVIAALIVTFLAFVVPLPYYIEVPGGSEDIRQVLKVNDTEDKEAGAYQFVTVGVQHATLAHMIYAWLTPFT
DIRSAQETTGGSSDVEFMRINQFYMQTSQNMAKYQGLKTAGKDIELKYFGVYVLNVTDNSTFKGILNISDTVTAVNDQTF
DSSKDLIDYVSSQKLGDSVKVTYEEDGQTKSAEGKIITLENGKNGIGIGLIDRTEVISNVPISFSTAGIGGPSAGLMFSL
AIYTQIAHPDLRNGRIVAGTGTIDRDGNVGDIGGIDKKVVASARAGAAIFFAPDNPVSEEEQKAHPDAKNNYQTALEAAK
TIKTDMKIVPVKTLQDAIDYLKNNP

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=97515 R8474_RS09140 WP_000727277.1 1805584..1806621(-) (sepM) [Streptococcus pneumoniae strain PZ900700003]
ATGAAAAAAAAGATTAGATGGCCCTTATACGTCATTGCGGCCTTGATTGTGACTTTCTTGGCATTTGTAGTGCCCTTGCC
TTATTATATAGAGGTTCCAGGTGGTTCGGAAGATATTCGCCAAGTCCTTAAAGTAAATGACACAGAAGATAAGGAAGCTG
GTGCTTATCAATTCGTTACGGTTGGTGTTCAACATGCCACTTTAGCTCATATGATTTATGCTTGGTTGACACCTTTTACA
GATATTCGTAGTGCTCAGGAGACTACAGGTGGTTCTTCCGATGTTGAATTTATGCGAATCAATCAATTCTACATGCAAAC
ATCGCAAAATATGGCCAAGTATCAAGGACTAAAAACAGCTGGTAAGGATATCGAACTCAAGTACTTTGGAGTTTATGTTT
TGAATGTGACGGATAATTCAACCTTTAAAGGGATTCTCAATATCTCTGATACAGTCACAGCAGTCAATGATCAGACCTTT
GATAGTTCCAAAGACTTGATTGATTACGTCAGTTCTCAAAAATTAGGGGATTCCGTCAAGGTCACCTATGAAGAGGATGG
GCAAACCAAGTCTGCAGAAGGAAAGATTATCACCTTGGAAAATGGCAAAAATGGAATTGGAATCGGCTTGATTGACCGTA
CAGAGGTAATCAGCAATGTCCCAATTAGCTTTTCAACAGCTGGTATTGGCGGTCCAAGTGCTGGTCTCATGTTTAGTCTA
GCTATCTATACTCAAATAGCTCACCCAGATCTTCGTAATGGTCGTATTGTTGCCGGTACAGGTACCATTGACCGCGATGG
TAATGTGGGAGACATTGGAGGTATTGATAAGAAGGTTGTAGCTTCGGCTAGGGCAGGTGCTGCTATTTTCTTTGCTCCTG
ATAACCCTGTTAGCGAAGAAGAACAAAAGGCGCATCCGGACGCGAAAAACAATTACCAAACAGCCCTAGAAGCGGCTAAA
ACAATCAAGACGGATATGAAAATCGTGCCCGTTAAAACCCTACAAGATGCGATTGATTACTTGAAAAACAATCCCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0B7LHQ0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

59.649

99.13

0.591


Multiple sequence alignment