Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   UXQ52_RS06440 Genome accession   NZ_CP151121
Coordinates   1291217..1292089 (+) Length   290 a.a.
NCBI ID   WP_031836442.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BSN55-2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1286217..1297089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UXQ52_RS06420 (UXQ52_06420) sucC 1286331..1287497 (+) 1167 WP_031836441.1 ADP-forming succinate--CoA ligase subunit beta -
  UXQ52_RS06425 (UXQ52_06425) sucD 1287519..1288427 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  UXQ52_RS06430 (UXQ52_06430) - 1288654..1289772 (+) 1119 WP_001041662.1 LysM peptidoglycan-binding domain-containing protein -
  UXQ52_RS06435 (UXQ52_06435) fmhC 1289800..1291044 (+) 1245 WP_000672867.1 FemA/FemB family glycyltransferase FmhC -
  UXQ52_RS06440 (UXQ52_06440) dprA 1291217..1292089 (+) 873 WP_031836442.1 DNA-processing protein DprA Machinery gene
  UXQ52_RS06445 (UXQ52_06445) topA 1292263..1294338 (+) 2076 WP_001548566.1 type I DNA topoisomerase -
  UXQ52_RS06450 (UXQ52_06450) trmFO 1294494..1295801 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33581.03 Da        Isoelectric Point: 9.5094

>NTDB_id=975048 UXQ52_RS06440 WP_031836442.1 1291217..1292089(+) (dprA) [Staphylococcus aureus strain BSN55-2]
MIKLFLLKLYWAHFSTKQIHQFLMAYPNVIKEEGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNLMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=975048 UXQ52_RS06440 WP_031836442.1 1291217..1292089(+) (dprA) [Staphylococcus aureus strain BSN55-2]
TTGATTAAACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGAGGGAAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATTCTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCTGAATATCCACCACATACACCAATCGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCTTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

99.655

100

0.997
  dprA Staphylococcus aureus N315

99.31

100

0.993

Multiple sequence alignment