Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   ACK2OW_RS15265 Genome accession   NZ_CP180575
Coordinates   2833031..2834056 (+) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain K3C     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2828031..2839056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2OW_RS15230 (ACK2OW_15230) ylbE 2828331..2828570 (+) 240 WP_003232231.1 YlbE-like family protein -
  ACK2OW_RS15235 (ACK2OW_15235) ylbF 2828686..2829135 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  ACK2OW_RS15240 (ACK2OW_15240) ylbG 2829190..2829462 (+) 273 WP_009967171.1 YlbG family protein -
  ACK2OW_RS15245 (ACK2OW_15245) rsmD 2829785..2830339 (+) 555 WP_416042330.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACK2OW_RS15250 (ACK2OW_15250) coaD 2830344..2830829 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  ACK2OW_RS15255 (ACK2OW_15255) spoVV 2830840..2832066 (-) 1227 WP_064671350.1 dipicolinic acid transporter SpoVV -
  ACK2OW_RS15260 (ACK2OW_15260) ylbK 2832247..2833029 (+) 783 WP_003232221.1 patatin family protein -
  ACK2OW_RS15265 (ACK2OW_15265) sepM 2833031..2834056 (+) 1026 WP_003245451.1 protease DdcP Regulator
  ACK2OW_RS15270 (ACK2OW_15270) tmcAL 2834073..2835320 (-) 1248 WP_095252588.1 nucleotidyltransferase -
  ACK2OW_RS15275 (ACK2OW_15275) - 2835317..2835502 (-) 186 WP_003232215.1 hypothetical protein -
  ACK2OW_RS15280 (ACK2OW_15280) ylbN 2835530..2836048 (+) 519 WP_014479718.1 YceD family protein -
  ACK2OW_RS15285 (ACK2OW_15285) rpmF 2836070..2836249 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  ACK2OW_RS15290 (ACK2OW_15290) gerR 2836395..2836976 (+) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  ACK2OW_RS15295 (ACK2OW_15295) ylbP 2837033..2837515 (-) 483 WP_014476736.1 N-acetyltransferase -
  ACK2OW_RS15300 (ACK2OW_15300) panEA 2837675..2838571 (+) 897 WP_021479342.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=975045 ACK2OW_RS15265 WP_003245451.1 2833031..2834056(+) (sepM) [Bacillus subtilis strain K3C]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=975045 ACK2OW_RS15265 WP_003245451.1 2833031..2834056(+) (sepM) [Bacillus subtilis strain K3C]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTAATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402