Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   ACK2OW_RS15235 Genome accession   NZ_CP180575
Coordinates   2828686..2829135 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain K3C     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2823686..2834135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2OW_RS15195 (ACK2OW_15195) ctaE 2823704..2824327 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  ACK2OW_RS15200 (ACK2OW_15200) ctaF 2824330..2824662 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  ACK2OW_RS15205 (ACK2OW_15205) ctaG 2824689..2825582 (+) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  ACK2OW_RS15210 (ACK2OW_15210) ylbA 2825614..2825976 (-) 363 WP_003232238.1 YugN family protein -
  ACK2OW_RS15215 (ACK2OW_15215) ylbB 2826116..2826562 (+) 447 WP_003221362.1 CBS domain-containing protein -
  ACK2OW_RS15220 (ACK2OW_15220) ylbC 2826646..2827686 (+) 1041 WP_032725641.1 CAP domain-containing protein -
  ACK2OW_RS15225 (ACK2OW_15225) ylbD 2827917..2828315 (+) 399 WP_032725642.1 YlbD family protein -
  ACK2OW_RS15230 (ACK2OW_15230) ylbE 2828331..2828570 (+) 240 WP_003232231.1 YlbE-like family protein -
  ACK2OW_RS15235 (ACK2OW_15235) ylbF 2828686..2829135 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  ACK2OW_RS15240 (ACK2OW_15240) ylbG 2829190..2829462 (+) 273 WP_009967171.1 YlbG family protein -
  ACK2OW_RS15245 (ACK2OW_15245) rsmD 2829785..2830339 (+) 555 WP_416042330.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACK2OW_RS15250 (ACK2OW_15250) coaD 2830344..2830829 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  ACK2OW_RS15255 (ACK2OW_15255) spoVV 2830840..2832066 (-) 1227 WP_064671350.1 dipicolinic acid transporter SpoVV -
  ACK2OW_RS15260 (ACK2OW_15260) ylbK 2832247..2833029 (+) 783 WP_003232221.1 patatin family protein -
  ACK2OW_RS15265 (ACK2OW_15265) sepM 2833031..2834056 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=975044 ACK2OW_RS15235 WP_003221370.1 2828686..2829135(+) (ylbF) [Bacillus subtilis strain K3C]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=975044 ACK2OW_RS15235 WP_003221370.1 2828686..2829135(+) (ylbF) [Bacillus subtilis strain K3C]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGTTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1