Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   UXR13_RS11155 Genome accession   NZ_CP151118
Coordinates   2217635..2218030 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BSN55     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2212635..2223030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UXR13_RS11130 (UXR13_11135) thiE 2213235..2213876 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  UXR13_RS11135 (UXR13_11140) thiM 2213878..2214669 (-) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  UXR13_RS11140 (UXR13_11145) thiD 2214653..2215483 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  UXR13_RS11145 (UXR13_11150) tenA 2215476..2216165 (-) 690 WP_000396077.1 thiaminase II -
  UXR13_RS11150 (UXR13_11155) sceD 2216551..2217246 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  UXR13_RS11155 (UXR13_11160) ssb 2217635..2218030 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  UXR13_RS11160 (UXR13_11165) - 2218224..2218664 (+) 441 WP_000846746.1 YwpF-like family protein -
  UXR13_RS11165 (UXR13_11170) fabZ 2218723..2219163 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  UXR13_RS11170 (UXR13_11175) murA 2219197..2220462 (-) 1266 WP_000358000.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  UXR13_RS11175 (UXR13_11180) - 2220573..2220806 (-) 234 WP_000384523.1 DUF1146 family protein -
  UXR13_RS11180 (UXR13_11185) - 2220979..2221263 (+) 285 WP_000807441.1 hypothetical protein -
  UXR13_RS11185 (UXR13_11190) - 2221420..2221722 (+) 303 WP_000572392.1 hypothetical protein -
  UXR13_RS11190 (UXR13_11195) - 2221761..2222096 (+) 336 WP_000312573.1 DUF961 family protein -
  UXR13_RS11195 (UXR13_11200) - 2222100..2222402 (+) 303 WP_000398118.1 hypothetical protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=975030 UXR13_RS11155 WP_000932694.1 2217635..2218030(-) (ssb) [Staphylococcus aureus strain BSN55]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=975030 UXR13_RS11155 WP_000932694.1 2217635..2218030(-) (ssb) [Staphylococcus aureus strain BSN55]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment