Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   UXR13_RS02750 Genome accession   NZ_CP151118
Coordinates   575688..576257 (+) Length   189 a.a.
NCBI ID   WP_031836406.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BSN55     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 570688..581257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UXR13_RS02725 (UXR13_02725) cysE 571901..572548 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  UXR13_RS02730 (UXR13_02730) cysS 572532..573932 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  UXR13_RS02735 (UXR13_02735) - 573925..574329 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  UXR13_RS02740 (UXR13_02740) rlmB 574337..575083 (+) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  UXR13_RS02745 (UXR13_02745) - 575083..575607 (+) 525 WP_000664738.1 NYN domain-containing protein -
  UXR13_RS02750 (UXR13_02750) sigH 575688..576257 (+) 570 WP_031836406.1 RNA polymerase sigma factor Regulator
  UXR13_RS02755 (UXR13_02755) rpmG 576372..576515 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  UXR13_RS02760 (UXR13_02760) secE 576571..576753 (+) 183 WP_001074474.1 preprotein translocase subunit SecE -
  UXR13_RS02765 (UXR13_02765) nusG 576766..577314 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  UXR13_RS02770 (UXR13_02770) rplK 577495..577917 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  UXR13_RS02775 (UXR13_02775) rplA 578125..578817 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  UXR13_RS02780 (UXR13_02780) rplJ 579089..579589 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  UXR13_RS02785 (UXR13_02785) rplL 579632..580000 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  UXR13_RS02790 (UXR13_02790) - 580175..580783 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23044.95 Da        Isoelectric Point: 9.4170

>NTDB_id=975000 UXR13_RS02750 WP_031836406.1 575688..576257(+) (sigH) [Staphylococcus aureus strain BSN55]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQLFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=975000 UXR13_RS02750 WP_031836406.1 575688..576257(+) (sigH) [Staphylococcus aureus strain BSN55]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCTTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.942

100

0.989
  sigH Staphylococcus aureus MW2

97.884

100

0.979

Multiple sequence alignment