Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   R8474_RS07705 Genome accession   NZ_AP026914
Coordinates   1519745..1520476 (-) Length   243 a.a.
NCBI ID   WP_317641681.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700003     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1514745..1525476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8474_RS07675 (PC0003_15230) blpC 1515293..1515421 (+) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -
  R8474_RS07680 (PC0003_15240) - 1515492..1516832 (-) 1341 WP_001017646.1 sensor histidine kinase -
  R8474_RS07685 (PC0003_15250) comE/blpR 1516846..1517583 (-) 738 WP_001219120.1 LytTR family DNA-binding domain-containing protein Regulator
  R8474_RS07690 (PC0003_15260) - 1517588..1517926 (-) 339 WP_317641671.1 LytTR family DNA-binding domain-containing protein -
  R8474_RS07695 (PC0003_15270) - 1518202..1518531 (+) 330 WP_000132567.1 hypothetical protein -
  R8474_RS07700 (PC0003_15280) - 1518699..1519748 (-) 1050 WP_317641679.1 ABC transporter permease -
  R8474_RS07705 (PC0003_15290) pptA 1519745..1520476 (-) 732 WP_317641681.1 ABC transporter ATP-binding protein Regulator
  R8474_RS07710 (PC0003_15300) - 1520544..1520954 (+) 411 WP_001278301.1 HIT family protein -
  R8474_RS07715 (PC0003_15310) - 1520964..1521251 (+) 288 WP_268217887.1 hypothetical protein -
  R8474_RS07720 (PC0003_15320) - 1521413..1521697 (+) 285 WP_050150649.1 hypothetical protein -
  R8474_RS07725 (PC0003_15330) dnaJ 1522031..1523167 (-) 1137 WP_317641686.1 molecular chaperone DnaJ -
  R8474_RS07730 (PC0003_15340) - 1523440..1523796 (-) 357 WP_000114422.1 hypothetical protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27027.57 Da        Isoelectric Point: 4.8754

>NTDB_id=97498 R8474_RS07705 WP_317641681.1 1519745..1520476(-) (pptA) [Streptococcus pneumoniae strain PZ900700003]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTMQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAIADLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFNMPEASLNDIYLALTKE
EEL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=97498 R8474_RS07705 WP_317641681.1 1519745..1520476(-) (pptA) [Streptococcus pneumoniae strain PZ900700003]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTATGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCCATGGCTTATGGTATTGAGCAGAA
AGTGGCTTTTGAGCGAGTAGAGCCCTTGTTAAAAATGTTCCGTCTGGACCAGAAATTAGACTGGTTTCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTAGATCCGAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTGGATCCGCTGGCGATTGCAGACTTGATTCAGCTTTTGGAAGTGGAAAAGCAAAAGGGCAAGTCCATTCTTAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTTATTCTTCATAAGGGAGAGGTGCGTGCCAAGG
GAAATCTCCTGCAACTGCGCGAAGCCTTTAACATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGAACTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment