Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABXH20_RS06350 Genome accession   NZ_AP031328
Coordinates   1163922..1165142 (-) Length   406 a.a.
NCBI ID   WP_353299912.1    Uniprot ID   -
Organism   Thermus thermophilus strain TF24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1158922..1170142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXH20_RS06325 (TthTF24_12490) - 1159511..1160590 (+) 1080 WP_093005794.1 prephenate dehydrogenase/arogenate dehydrogenase family protein -
  ABXH20_RS06330 (TthTF24_12500) - 1160575..1161525 (-) 951 WP_353299909.1 GGDEF domain-containing protein -
  ABXH20_RS06335 (TthTF24_12510) - 1161578..1162933 (-) 1356 WP_353299910.1 FAD-linked oxidase C-terminal domain-containing protein -
  ABXH20_RS06340 (TthTF24_12520) - 1162943..1163425 (-) 483 WP_093005788.1 hypothetical protein -
  ABXH20_RS06345 (TthTF24_12530) - 1163495..1163947 (+) 453 WP_353299911.1 EVE domain-containing protein -
  ABXH20_RS06350 (TthTF24_12540) pilC 1163922..1165142 (-) 1221 WP_353299912.1 type II secretion system F family protein Machinery gene
  ABXH20_RS06355 (TthTF24_12550) - 1165141..1165728 (+) 588 WP_353299913.1 L-threonylcarbamoyladenylate synthase -
  ABXH20_RS06360 (TthTF24_12560) scpB 1165732..1166265 (+) 534 WP_353299914.1 SMC-Scp complex subunit ScpB -
  ABXH20_RS06365 (TthTF24_12570) - 1166209..1167291 (-) 1083 WP_353299915.1 PIG-L family deacetylase -
  ABXH20_RS06370 (TthTF24_12580) - 1167325..1167951 (+) 627 WP_353299916.1 GNAT family N-acetyltransferase -
  ABXH20_RS06375 (TthTF24_12590) - 1167961..1169118 (+) 1158 WP_353299917.1 acyl-CoA dehydrogenase family protein -
  ABXH20_RS06380 (TthTF24_12600) holA 1169153..1170031 (+) 879 WP_353299918.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44708.84 Da        Isoelectric Point: 9.8254

>NTDB_id=97497 ABXH20_RS06350 WP_353299912.1 1163922..1165142(-) (pilC) [Thermus thermophilus strain TF24]
MPVYQYKARDRQGRLVEATIEAEDLRTAARLLRDRGLFVAEIKEPGKGLQAEVRIPLLERGPGLKDLAIFSRQLATMLGA
GLTLLQALAILEKQTENKKFREILKQVRTDIEGGMAFSEALAKHKLFSRLYVNLVRAGETSGGLDLILDRLASFLEKELE
LRGKIRSAMTYPVIVFIFAVGVAYFLLTGIVPQFAQILTDLGSELPLLTRFLIAVSDLLRAATLPLLLLAVALFFAYRWY
YGTPQGRKVIDRIKLRVPVFGNLNRKTAVARFSRTLALLLQSGVNIVESLDITKGTAGNVVVEEIVEAAKGRIRQGDPLN
LTLAQHPFVFPPMVSSMVAIGEETGALDTLLSKIADFYEREVDEAVASLTAAIEPLMIIFLGVIVGMIVAGMFLPLFKII
GTLSVQ

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=97497 ABXH20_RS06350 WP_353299912.1 1163922..1165142(-) (pilC) [Thermus thermophilus strain TF24]
ATGCCGGTCTACCAGTATAAGGCCCGGGACCGCCAGGGCCGTCTGGTGGAGGCCACCATTGAGGCCGAGGACCTCCGCAC
CGCCGCGAGGCTCCTCCGCGACCGGGGCCTCTTCGTGGCCGAGATCAAGGAGCCGGGGAAGGGCCTGCAGGCGGAGGTCC
GGATCCCCCTTCTGGAGCGGGGGCCCGGTCTTAAGGACCTCGCCATCTTCTCCCGGCAGCTTGCCACCATGCTGGGGGCG
GGCCTCACCCTCCTCCAGGCCCTCGCCATCCTGGAAAAGCAGACCGAAAACAAAAAGTTCCGGGAGATCCTCAAGCAAGT
CCGCACGGACATTGAAGGGGGCATGGCCTTTTCCGAGGCCCTGGCCAAGCACAAGCTCTTCTCCCGTCTCTACGTGAACC
TGGTGCGGGCGGGGGAGACCTCGGGGGGGCTGGACCTCATCCTAGACCGGCTGGCGAGCTTCTTGGAAAAGGAGCTGGAG
CTAAGGGGCAAGATCCGAAGCGCCATGACCTACCCCGTCATCGTCTTCATCTTCGCCGTGGGTGTGGCCTATTTTCTCCT
CACGGGGATCGTGCCCCAGTTCGCCCAGATCCTCACCGATCTCGGCTCCGAGCTTCCCCTCCTCACCCGCTTCCTCATCG
CCGTCTCCGACCTCCTTAGGGCGGCTACCCTGCCCCTCCTCCTCCTCGCCGTGGCCCTCTTCTTTGCCTACCGCTGGTAC
TACGGCACCCCCCAGGGGCGGAAGGTCATTGACCGCATCAAGCTCAGGGTGCCGGTTTTCGGCAACCTCAACCGCAAGAC
CGCGGTGGCCCGCTTTTCCCGCACCCTGGCCCTCCTCCTCCAAAGCGGCGTGAACATCGTGGAGTCCTTGGACATCACCA
AAGGCACCGCGGGGAACGTGGTGGTGGAGGAGATCGTGGAGGCGGCCAAGGGGCGGATCCGGCAAGGGGACCCCCTGAAC
CTCACCCTGGCTCAGCACCCCTTCGTCTTCCCCCCCATGGTGAGCTCCATGGTGGCCATCGGCGAGGAGACGGGTGCCCT
GGACACCCTGCTCTCCAAGATCGCCGACTTCTACGAGCGGGAGGTGGACGAGGCGGTGGCCAGCCTCACCGCCGCCATTG
AGCCCCTCATGATCATCTTCCTGGGCGTCATCGTGGGGATGATCGTGGCGGGGATGTTCCTGCCCCTCTTCAAGATCATC
GGGACCCTCTCTGTGCAATAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(272-395)

Type II secretion system (T2SS), protein F (T2SSF)

(70-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Thermus thermophilus HB27

95.567

100

0.956
  pilC Acinetobacter baylyi ADP1

36.973

99.261

0.367

Multiple sequence alignment