Detailed information    

insolico Bioinformatically predicted

Overview


Name   mecA   Type   Regulator
Locus tag   AABL52_RS20890 Genome accession   NZ_CP151108
Coordinates   4078791..4079474 (-) Length   227 a.a.
NCBI ID   WP_000350718.1    Uniprot ID   -
Organism   Bacillus paramobilis strain IMGN7     
Function   degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context


Location: 4073791..4084474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABL52_RS20875 (AABL52_20875) pepF 4073972..4075798 (-) 1827 WP_061678734.1 oligoendopeptidase F Regulator
  AABL52_RS20880 (AABL52_20880) - 4075849..4077093 (-) 1245 WP_097845340.1 competence protein CoiA family protein -
  AABL52_RS20885 (AABL52_20885) - 4077174..4078718 (-) 1545 WP_000799208.1 cardiolipin synthase -
  AABL52_RS20890 (AABL52_20890) mecA 4078791..4079474 (-) 684 WP_000350718.1 adaptor protein MecA Regulator
  AABL52_RS20895 (AABL52_20895) - 4079815..4080489 (+) 675 WP_341518321.1 TerC family protein -
  AABL52_RS20900 (AABL52_20900) spx 4080539..4080934 (-) 396 WP_000258267.1 transcriptional regulator Spx -
  AABL52_RS20905 (AABL52_20905) - 4081527..4081730 (+) 204 WP_000559978.1 hypothetical protein -
  AABL52_RS20910 (AABL52_20910) - 4081759..4083405 (-) 1647 WP_341518322.1 peptide ABC transporter substrate-binding protein -

Sequence


Protein


Download         Length: 227 a.a.        Molecular weight: 26995.05 Da        Isoelectric Point: 3.9986

>NTDB_id=974891 AABL52_RS20890 WP_000350718.1 4078791..4079474(-) (mecA) [Bacillus paramobilis strain IMGN7]
MDIERINDHTMKFFITYIDIEDRGFNREEIWYDRERSEELFWEMMDEARDHDDFFIDGPLWIQVQAVDKGIEVLVTKAEL
SKDGQKLELPIGVDKIIDIPLDEGIESLFQQELVEEVEEQTGTNFNEDGTFGFLIKFNDFEDVISLSHRLIFEDIKDELY
SFENRYYVYVEFDEVLHDEEEIDRILSIVLEYGEESTLTIHRVSEYGKQIVKEHALETIRNNFPAKT

Nucleotide


Download         Length: 684 bp        

>NTDB_id=974891 AABL52_RS20890 WP_000350718.1 4078791..4079474(-) (mecA) [Bacillus paramobilis strain IMGN7]
TTGGATATTGAAAGAATTAATGACCATACGATGAAATTTTTTATTACGTACATTGACATAGAGGACAGAGGATTTAATCG
TGAAGAAATTTGGTACGACCGCGAACGAAGTGAAGAGCTCTTTTGGGAGATGATGGACGAAGCTCGTGATCATGATGATT
TCTTTATTGATGGACCGTTATGGATTCAAGTGCAAGCAGTCGATAAAGGGATTGAAGTACTTGTAACGAAAGCAGAGCTT
TCAAAGGATGGACAAAAGTTAGAACTACCAATAGGTGTAGATAAAATTATAGACATTCCTCTAGATGAAGGCATTGAATC
ATTATTCCAGCAAGAATTAGTGGAAGAGGTAGAGGAACAAACAGGAACAAACTTTAACGAAGATGGTACGTTTGGCTTTT
TAATTAAGTTTAATGATTTTGAAGATGTCATTTCATTAAGCCACCGTCTTATCTTTGAAGATATAAAAGATGAGCTGTAT
TCATTTGAGAACCGCTATTATGTATATGTGGAATTCGATGAAGTGCTACATGATGAAGAAGAAATTGATCGTATTTTAAG
TATTGTTTTAGAGTACGGAGAAGAATCAACTTTAACAATTCATCGTGTAAGTGAGTATGGGAAACAAATTGTGAAAGAGC
ATGCGCTTGAAACAATTCGCAATAATTTTCCTGCTAAAACGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mecA Bacillus subtilis subsp. subtilis str. 168

56.14

100

0.564


Multiple sequence alignment