Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AABL52_RS20875 Genome accession   NZ_CP151108
Coordinates   4073972..4075798 (-) Length   608 a.a.
NCBI ID   WP_061678734.1    Uniprot ID   A0A556CIW8
Organism   Bacillus paramobilis strain IMGN7     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 4068972..4080798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABL52_RS20840 (AABL52_20840) - 4069389..4070186 (-) 798 WP_000673186.1 NAD kinase -
  AABL52_RS20845 (AABL52_20845) - 4070205..4070843 (-) 639 WP_001081480.1 GTP pyrophosphokinase family protein -
  AABL52_RS20850 (AABL52_20850) - 4070874..4071245 (-) 372 WP_001179996.1 hypothetical protein -
  AABL52_RS20855 (AABL52_20855) - 4071392..4071970 (+) 579 WP_341518319.1 CYTH domain-containing protein -
  AABL52_RS20860 (AABL52_20860) - 4072151..4072549 (+) 399 WP_000043382.1 hypothetical protein -
  AABL52_RS20865 (AABL52_20865) - 4072549..4073442 (+) 894 WP_000360655.1 ClpXP adapter SpxH family protein -
  AABL52_RS20870 (AABL52_20870) - 4073672..4073845 (+) 174 WP_341518320.1 hypothetical protein -
  AABL52_RS20875 (AABL52_20875) pepF 4073972..4075798 (-) 1827 WP_061678734.1 oligoendopeptidase F Regulator
  AABL52_RS20880 (AABL52_20880) - 4075849..4077093 (-) 1245 WP_097845340.1 competence protein CoiA family protein -
  AABL52_RS20885 (AABL52_20885) - 4077174..4078718 (-) 1545 WP_000799208.1 cardiolipin synthase -
  AABL52_RS20890 (AABL52_20890) mecA 4078791..4079474 (-) 684 WP_000350718.1 adaptor protein MecA Regulator
  AABL52_RS20895 (AABL52_20895) - 4079815..4080489 (+) 675 WP_341518321.1 TerC family protein -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70313.60 Da        Isoelectric Point: 4.6462

>NTDB_id=974890 AABL52_RS20875 WP_061678734.1 4073972..4075798(-) (pepF) [Bacillus paramobilis strain IMGN7]
MSEQNTAKTLPDRKEIEESSTWRLEDIFQTDAEWEKEFQAIKELLPKLTEFKGKLGDSANNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLKENRDLSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEVEITHGRYIQFLESDDRRVREDAFKAVYETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVESVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDMLLKSLNVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLYTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDSLVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=974890 AABL52_RS20875 WP_061678734.1 4073972..4075798(-) (pepF) [Bacillus paramobilis strain IMGN7]
ATGTCTGAACAAAACACAGCAAAAACATTACCAGATCGCAAAGAAATTGAAGAATCAAGTACGTGGCGATTAGAAGATAT
TTTCCAAACAGATGCAGAATGGGAAAAAGAATTCCAAGCCATTAAAGAGCTATTACCGAAGTTAACTGAATTTAAAGGGA
AACTTGGTGACTCTGCGAACAATTTACTTGAAGCATTACAATATGAAGATGAAATTTCAATGCGATTAGGTAAGCTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCGTTAAATGACCGCGCGACAAATTTATA
TTCACAAGTATCTAGTAGCACAGCATATATTGTGCCTGAAATTTTATCGATTTCAGAAGATACATTGCAAACATTCTTGA
AAGAAAATAGAGACTTAAGTGTATATGAACATGCATTAGAAGAAATTACGCGTCAACGCCCGCACGTATTATCTGAAGCG
GAAGAGGCTCTATTAGCAGAAGCATCTGAAGTAATGAGTGCATCAAGTAATACATTTGGTATGTTGAATAATGCGGATTT
GAAATTCCCATCTATTAAAGGTGAGGATGGAGAAGAAGTAGAAATTACACATGGTCGTTACATTCAGTTTTTAGAAAGCG
ATGATCGTCGTGTGCGCGAAGATGCATTCAAAGCTGTATATGAAACATACGGAAAATATAAGAATACATTTGCAAGTACG
TTAAGCGGAGCTGTGAAACGTAATAATTTCAATGCACGTGTTCGTAAATACGATTCTGCACGTCAAGCGGCATTAAGTAA
TAATAATATTCCTGAAGCTGTGTATGATCAACTTGTTGAATCTGTAAATGATAATTTACACTTGCTACATCGTTACATTG
ATATTCGTAAGCGTGCACTAGGGCTTGATGAGCTTCATATGTATGATTTATATACACCACTTGTACCAGAAGTGAAAATG
AACGTGAAGTATGAAGAAGCACAAGACATGTTGTTAAAATCTTTAAACGTACTTGGTGATGAGTATGTTGACATTTTAAA
AGAAGCATATGAAAATCGCTGGGTAGATGTGTATGAGAATAAAGGGAAGCGAAGCGGAGCATATTCATCTGGTGCATATG
GAACAAATCCGTATATTTTAATGAACTGGCATGATAATGTAAATAACTTATATACACTTGCTCATGAGTTCGGTCATTCT
GTGCATAGTTACTACACAAGAAAAACGCAGCCGCACGTATATGGTGATTATTCAATCTTCGTTGCAGAAGTAGCATCAAC
TTGTAATGAAGCGCTTCTAAACGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATACTTATTAAATCATT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACGATGTTCGCGGAGTTTGAGCATATTATTCATAAGAAAGTACAA
GAGGGACATGCGGTTACGCCAGACATGTTAACAGAGATTTACTATGATTTAAATAAGAAATATTTCGGTGATTCTTTAGT
AATCGATGAAGAAATTGGTTTAGAGTGGTCTCGTATTCCGCACTTCTACTACAACTATTACGTATATCAATACGCAACAG
GATTTAGTGCAGCAACAGCTCTATCTAAACAAATTTTAGAAGAGGGGCAACCAGCAGTAGAACGTTACATTAATGAGTTC
TTAAAAGCAGGAAGCTCAGATTATCCAATTGAAGTGCTGAAAAAAGCTGGAGTAGATATGGCATCTCCAGAGCCGGTAAA
AGAAGCATTGCAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCATTATTATTTGAAGAGAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A556CIW8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.084

97.533

0.488

Multiple sequence alignment