Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AABL52_RS06580 Genome accession   NZ_CP151108
Coordinates   1247484..1249223 (+) Length   579 a.a.
NCBI ID   WP_000947744.1    Uniprot ID   -
Organism   Bacillus paramobilis strain IMGN7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1242484..1254223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABL52_RS06560 (AABL52_06560) ispA 1242696..1243586 (+) 891 WP_000150372.1 (2E,6E)-farnesyl diphosphate synthase -
  AABL52_RS06565 (AABL52_06565) dxs 1243889..1245781 (+) 1893 WP_000366438.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AABL52_RS06570 (AABL52_06570) - 1245785..1246624 (+) 840 WP_001274748.1 TlyA family RNA methyltransferase -
  AABL52_RS06575 (AABL52_06575) argR 1246767..1247216 (+) 450 WP_001032581.1 arginine repressor ArgR -
  AABL52_RS06580 (AABL52_06580) recN 1247484..1249223 (+) 1740 WP_000947744.1 DNA repair protein RecN Machinery gene
  AABL52_RS06585 (AABL52_06585) spoIVB 1249342..1250640 (+) 1299 WP_341519073.1 SpoIVB peptidase -
  AABL52_RS06590 (AABL52_06590) spo0A 1250928..1251722 (+) 795 WP_141524208.1 sporulation transcription factor Spo0A Regulator
  AABL52_RS06595 (AABL52_06595) - 1252015..1253541 (+) 1527 WP_097843921.1 glycosyltransferase family 39 protein -
  AABL52_RS06600 (AABL52_06600) - 1253728..1253874 (-) 147 WP_120450858.1 YycC family protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65785.85 Da        Isoelectric Point: 4.8574

>NTDB_id=974876 AABL52_RS06580 WP_000947744.1 1247484..1249223(+) (recN) [Bacillus paramobilis strain IMGN7]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHMFMLDHFDGDRIVKQL
SIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNIRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATSLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=974876 AABL52_RS06580 WP_000947744.1 1247484..1249223(+) (recN) [Bacillus paramobilis strain IMGN7]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGATTAACGGTTTT
AAGTGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGTTCAGCGGAAT
TTGTTCGATACGGAACAGAAAAAGCTGAGATAGAAGGGCTATTTTATGTAGAAGATGATAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTGGATATAGAAATAGAAGACGGCATGATTATTTTGAAGCGTGATATCGCTGCAAACGGGAAAAGTGTATG
TCGTGTAAATGGGAAACTGGTTACCCTTAGTATATTAAAGGAAATTGGAAAAACACTTGTTGATATTCATGGGCAGCACG
AAACACAAGATTTAATGAATGAAGAGCGTCATATGTTTATGCTTGATCATTTTGATGGAGATCGCATTGTTAAACAATTG
AGTATATATCAAAATGTATACGCTGACTATGAGAAGTTAAAAAAACAGTTAAAATCGTTAAGTGAAAATGAACAACAGAT
GGCGCATCGTTTAGATTTAATTCAATTCCAGCATGAAGAAATCCGTAAGGCGGATTTAAAGATGGATGAAGAAAATGAGT
TAACTGAAGAACGATTGCAAATTTCTAATTTTGAAAAAATTTACAAAGCATTAGGCGATGCATATCGCTCACTAAGCGCT
GACGGACAAGGATTAGATAATATACGAAGCGCAATGGGACAAATGGAGAGTATTACACATTTAGATGAAGTGTATCAAGA
AAACCATGATTCAATTGCAAATAGCTACTACTTATTAGAAGAAGTTGCATATCAACTTAGAGAAAAGCTCGATATGATGG
AATATGATCCGAATCGTTTAGACGAAATTGAAACACGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACCATTGAGAATAAAGACGTTCATATTGAAAC
GACGAAGAAGCAATTAAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCGACGTCGTTAAGTAATATGCGTCATGAGCTTG
CAGAGCATCTTACAAATGCCATTCATCAGGAATTAAAAGAATTATATATGGAGAAAACAAAATTTGAAGTGAGAATCATG
AAGAGAGAAGGAAATGCTGAAGAGCCTCTTGTGGAGGGTGCCCCGGTAAGGCTGACAGCGGATGGCTATGATCATGTGGA
ATTTTATATTTCAACAAATCCAGGTGAGCCGCTAAAACCACTTTCAAAGGTCGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACTGGTGTAAGT
GGTCGAGTTGCACAGGCTATTGCAGAAAAAATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCACATTTATTTATTCGAAAACAAGTAGCGAATGATCGGACAATTACATCAGTTACCG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.758

100

0.598

Multiple sequence alignment