Detailed information NTG0974744

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QDT75_RS16555
• Genome accession: NZ_CP151078
• Coordinates: 3507357..3508217 (+)
• Length: 286 a.a.
• NCBI ID: WP_279722801.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain PUMA0052
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3502357..3513217

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QDT75_RS16535 (QDT75_16535)	secG	3502962..3503291 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
QDT75_RS16540 (QDT75_16540)	tpiA	3503304..3504098 (-)	795	WP_000016932.1	triose-phosphate isomerase	-
QDT75_RS16545 (QDT75_16545)	pilB	3504389..3506101 (+)	1713	WP_001274987.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QDT75_RS16550 (QDT75_16550)	pilC	3506131..3507357 (+)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
QDT75_RS16555 (QDT75_16555)	pilD	3507357..3508217 (+)	861	WP_279722801.1	A24 family peptidase	Machinery gene
QDT75_RS16560 (QDT75_16560)	coaE	3508219..3508815 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
QDT75_RS16565 (QDT75_16565)	-	3508812..3509726 (-)	915	WP_000075015.1	DMT family transporter	-
QDT75_RS16570 (QDT75_16570)	rlmB	3509762..3510511 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
QDT75_RS16575 (QDT75_16575)	-	3510613..3510939 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
QDT75_RS16580 (QDT75_16580)	-	3511016..3512326 (-)	1311	WP_279722802.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32076.56 Da
• Isoelectric Point: 7.5055

>NTDB_id=974744 QDT75_RS16555 WP_279722801.1 3507357..3508217(+) (pilD) [Acinetobacter baumannii strain PUMA0052]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQVWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=974744 QDT75_RS16555 WP_279722801.1 3507357..3508217(+) (pilD) [Acinetobacter baumannii strain PUMA0052]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGTTTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGTCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTAACTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.252	100	0.983
pilD	Acinetobacter nosocomialis M2	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437