Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | QDT75_RS09920 | Genome accession | NZ_CP151078 |
| Coordinates | 2092200..2092580 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain PUMA0052 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2087200..2097580
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDT75_RS09890 (QDT75_09890) | tadA | 2087318..2087821 (-) | 504 | WP_272381665.1 | tRNA adenosine(34) deaminase TadA | - |
| QDT75_RS09895 (QDT75_09895) | - | 2087828..2088952 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| QDT75_RS09900 (QDT75_09900) | ung | 2088949..2089662 (-) | 714 | WP_001177527.1 | uracil-DNA glycosylase | - |
| QDT75_RS09905 (QDT75_09905) | - | 2089713..2090309 (-) | 597 | WP_000908453.1 | 6-carboxytetrahydropterin synthase | - |
| QDT75_RS09910 (QDT75_09910) | gspK | 2090540..2091499 (-) | 960 | WP_279722655.1 | type II secretion system minor pseudopilin GspK | - |
| QDT75_RS09915 (QDT75_09915) | xcpW | 2091499..2092200 (-) | 702 | WP_279722654.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| QDT75_RS09920 (QDT75_09920) | xcpV | 2092200..2092580 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| QDT75_RS09925 (QDT75_09925) | - | 2092570..2093124 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| QDT75_RS09930 (QDT75_09930) | - | 2093134..2093742 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| QDT75_RS09935 (QDT75_09935) | - | 2093780..2094553 (-) | 774 | WP_005110997.1 | TatD family hydrolase | - |
| QDT75_RS09940 (QDT75_09940) | - | 2094571..2094912 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| QDT75_RS09945 (QDT75_09945) | - | 2094924..2095904 (-) | 981 | WP_001075416.1 | DNA polymerase III subunit delta' | - |
| QDT75_RS09950 (QDT75_09950) | kdsB | 2095916..2096677 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=974729 QDT75_RS09920 WP_000836911.1 2092200..2092580(-) (xcpV) [Acinetobacter baumannii strain PUMA0052]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=974729 QDT75_RS09920 WP_000836911.1 2092200..2092580(-) (xcpV) [Acinetobacter baumannii strain PUMA0052]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTATACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTATACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |