Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QDT75_RS02005 Genome accession   NZ_CP151078
Coordinates   424113..424748 (-) Length   211 a.a.
NCBI ID   WP_279722738.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain PUMA0052     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 419113..429748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QDT75_RS01970 (QDT75_01970) mlaE 419449..420225 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  QDT75_RS01975 (QDT75_01975) - 420225..420905 (+) 681 WP_279722737.1 outer membrane lipid asymmetry maintenance protein MlaD -
  QDT75_RS01980 (QDT75_01980) - 420932..421573 (+) 642 WP_001093907.1 ABC transporter substrate-binding protein -
  QDT75_RS01985 (QDT75_01985) - 421585..421872 (+) 288 WP_000250997.1 STAS domain-containing protein -
  QDT75_RS01990 (QDT75_01990) - 421942..422955 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  QDT75_RS01995 (QDT75_01995) - 423113..423694 (+) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  QDT75_RS02000 (QDT75_02000) - 423709..424110 (+) 402 WP_111811139.1 NUDIX domain-containing protein -
  QDT75_RS02005 (QDT75_02005) comF 424113..424748 (-) 636 WP_279722738.1 phosphoribosyltransferase family protein Machinery gene
  QDT75_RS02010 (QDT75_02010) recG 424741..426786 (-) 2046 WP_279722739.1 ATP-dependent DNA helicase RecG -
  QDT75_RS02015 (QDT75_02015) - 426807..427622 (+) 816 WP_000547774.1 NAD(P)H-binding protein -
  QDT75_RS02020 (QDT75_02020) adeT2 427702..428688 (+) 987 WP_000712910.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24627.81 Da        Isoelectric Point: 9.7140

>NTDB_id=974720 QDT75_RS02005 WP_279722738.1 424113..424748(-) (comF) [Acinetobacter baumannii strain PUMA0052]
MFKFLNPQYLFHLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALNQALKQLGCTSIHASCLAAALSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=974720 QDT75_RS02005 WP_279722738.1 424113..424748(-) (comF) [Acinetobacter baumannii strain PUMA0052]
ATGTTTAAGTTTTTAAACCCCCAGTATCTTTTTCATTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGCCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAACCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTGAA
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTTATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

98.578

100

0.986
  comF Acinetobacter baumannii D1279779

97.63

100

0.976

Multiple sequence alignment