Detailed information
Bioinformatically predicted
Overview
| Name | recF | Type | Machinery gene |
| Locus tag | AB4Y54_RS00590 | Genome accession | NZ_AP031325 |
| Coordinates | 109355..110386 (-) | Length | 343 a.a. |
| NCBI ID | WP_353300422.1 | Uniprot ID | - |
| Organism | Thermus thermophilus strain TF21 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 104355..115386
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB4Y54_RS00565 (TthTF21_01080) | pilD | 105315..106385 (+) | 1071 | WP_353300418.1 | prepilin peptidase | Machinery gene |
| AB4Y54_RS00570 (TthTF21_01090) | - | 106423..106926 (+) | 504 | WP_011227820.1 | DUF2939 domain-containing protein | - |
| AB4Y54_RS00575 (TthTF21_01100) | - | 106940..107860 (+) | 921 | WP_353300419.1 | nitroreductase family protein | - |
| AB4Y54_RS00580 (TthTF21_01110) | - | 107814..108611 (-) | 798 | WP_353300420.1 | LysM peptidoglycan-binding domain-containing protein | - |
| AB4Y54_RS00585 (TthTF21_01120) | - | 108612..109370 (-) | 759 | WP_353300421.1 | DUF721 domain-containing protein | - |
| AB4Y54_RS00590 (TthTF21_01130) | recF | 109355..110386 (-) | 1032 | WP_353300422.1 | DNA replication and repair protein RecF | Machinery gene |
| AB4Y54_RS00595 (TthTF21_01140) | - | 110386..111558 (-) | 1173 | WP_353300423.1 | MFS transporter | - |
| AB4Y54_RS00600 (TthTF21_01150) | pstB | 111568..112323 (-) | 756 | WP_353300916.1 | phosphate ABC transporter ATP-binding protein PstB | - |
| AB4Y54_RS00605 (TthTF21_01160) | pstA | 112351..113196 (-) | 846 | WP_353300424.1 | phosphate ABC transporter permease PstA | - |
| AB4Y54_RS00610 (TthTF21_01170) | pstC | 113193..114140 (-) | 948 | WP_353300425.1 | phosphate ABC transporter permease subunit PstC | - |
| AB4Y54_RS00615 (TthTF21_01180) | pstS | 114205..115281 (-) | 1077 | WP_353300426.1 | phosphate ABC transporter substrate-binding protein PstS | - |
Sequence
Protein
Download Length: 343 a.a. Molecular weight: 37660.47 Da Isoelectric Point: 7.9871
>NTDB_id=97410 AB4Y54_RS00590 WP_353300422.1 109355..110386(-) (recF) [Thermus thermophilus strain TF21]
MRLLLFRQRNFRNLALEAYRPPPGLSALVGANAQGKTSLLLGIHLALGGEVPLGLADLVRFGEEEAWLHAEVETELGAYR
LEHRLGPGGREVLLNGKRVSLRALWELPGSVLVSPLDLEAVLGPKEERRAYLDRLIARFSRRYAALLSAYEKALRQRNAL
LKAGGEGLSAWDRELARYGDEIVALRRRFLRRFAPILGEVHAALAAKEAGLRLEETAGEGVLRALEASRAEERERGQTLV
GPHRDDLVFLLEGRPAHRFASRGEAKTLALALRLAEHRLLGEHHGEPPLLLVDEWGEELDEARRRAVLAYAEALPQAILA
GLEAPPGVPVCSVVRGVVLCPGA
MRLLLFRQRNFRNLALEAYRPPPGLSALVGANAQGKTSLLLGIHLALGGEVPLGLADLVRFGEEEAWLHAEVETELGAYR
LEHRLGPGGREVLLNGKRVSLRALWELPGSVLVSPLDLEAVLGPKEERRAYLDRLIARFSRRYAALLSAYEKALRQRNAL
LKAGGEGLSAWDRELARYGDEIVALRRRFLRRFAPILGEVHAALAAKEAGLRLEETAGEGVLRALEASRAEERERGQTLV
GPHRDDLVFLLEGRPAHRFASRGEAKTLALALRLAEHRLLGEHHGEPPLLLVDEWGEELDEARRRAVLAYAEALPQAILA
GLEAPPGVPVCSVVRGVVLCPGA
Nucleotide
Download Length: 1032 bp
>NTDB_id=97410 AB4Y54_RS00590 WP_353300422.1 109355..110386(-) (recF) [Thermus thermophilus strain TF21]
ATGCGGTTGCTCCTCTTCCGGCAGCGGAACTTTCGCAACCTGGCCCTGGAGGCCTACCGCCCCCCGCCGGGCCTTTCCGC
CCTGGTGGGGGCCAACGCCCAGGGGAAGACGAGCCTCCTCCTGGGGATCCACCTGGCCCTAGGGGGGGAGGTCCCCCTGG
GCCTTGCCGACCTCGTCCGCTTCGGGGAGGAGGAGGCCTGGCTCCACGCCGAGGTGGAGACGGAGCTCGGGGCCTACCGC
CTGGAGCACCGCCTGGGCCCCGGGGGGCGGGAGGTCCTCCTCAACGGGAAGCGGGTGAGCCTTCGGGCCCTTTGGGAGCT
TCCCGGCTCGGTCCTCGTCTCCCCTCTGGACCTCGAGGCGGTCCTCGGGCCCAAGGAGGAGCGGCGGGCCTACCTGGACC
GGCTCATCGCCCGCTTTTCCCGCCGCTACGCCGCCCTCCTTTCCGCCTACGAGAAGGCGCTGCGCCAGCGGAACGCCCTC
CTCAAGGCCGGGGGGGAGGGTCTTTCCGCCTGGGACCGGGAGCTCGCCCGCTACGGGGACGAGATCGTGGCCCTGAGGCG
CCGCTTCCTCCGGCGCTTCGCCCCCATCCTGGGGGAGGTCCACGCCGCCCTCGCCGCCAAGGAGGCGGGGCTTCGCTTGG
AGGAGACCGCGGGGGAAGGGGTGCTCCGGGCCCTCGAGGCCAGCCGGGCCGAGGAGCGGGAGCGGGGCCAGACCCTGGTG
GGGCCCCACCGGGACGACCTGGTCTTCCTCCTGGAGGGGCGGCCCGCCCACCGGTTCGCCAGCCGCGGGGAGGCCAAGAC
CCTGGCCCTGGCCCTGCGCCTCGCCGAGCACCGCCTCCTCGGCGAGCACCACGGCGAGCCCCCCCTCCTCCTCGTGGACG
AGTGGGGGGAGGAGCTGGACGAGGCCCGCAGGCGGGCCGTCCTCGCCTACGCCGAGGCCCTGCCCCAGGCCATCCTGGCG
GGGCTGGAAGCCCCCCCGGGGGTGCCGGTATGCTCGGTGGTACGAGGGGTGGTCCTGTGCCCTGGCGCCTGA
ATGCGGTTGCTCCTCTTCCGGCAGCGGAACTTTCGCAACCTGGCCCTGGAGGCCTACCGCCCCCCGCCGGGCCTTTCCGC
CCTGGTGGGGGCCAACGCCCAGGGGAAGACGAGCCTCCTCCTGGGGATCCACCTGGCCCTAGGGGGGGAGGTCCCCCTGG
GCCTTGCCGACCTCGTCCGCTTCGGGGAGGAGGAGGCCTGGCTCCACGCCGAGGTGGAGACGGAGCTCGGGGCCTACCGC
CTGGAGCACCGCCTGGGCCCCGGGGGGCGGGAGGTCCTCCTCAACGGGAAGCGGGTGAGCCTTCGGGCCCTTTGGGAGCT
TCCCGGCTCGGTCCTCGTCTCCCCTCTGGACCTCGAGGCGGTCCTCGGGCCCAAGGAGGAGCGGCGGGCCTACCTGGACC
GGCTCATCGCCCGCTTTTCCCGCCGCTACGCCGCCCTCCTTTCCGCCTACGAGAAGGCGCTGCGCCAGCGGAACGCCCTC
CTCAAGGCCGGGGGGGAGGGTCTTTCCGCCTGGGACCGGGAGCTCGCCCGCTACGGGGACGAGATCGTGGCCCTGAGGCG
CCGCTTCCTCCGGCGCTTCGCCCCCATCCTGGGGGAGGTCCACGCCGCCCTCGCCGCCAAGGAGGCGGGGCTTCGCTTGG
AGGAGACCGCGGGGGAAGGGGTGCTCCGGGCCCTCGAGGCCAGCCGGGCCGAGGAGCGGGAGCGGGGCCAGACCCTGGTG
GGGCCCCACCGGGACGACCTGGTCTTCCTCCTGGAGGGGCGGCCCGCCCACCGGTTCGCCAGCCGCGGGGAGGCCAAGAC
CCTGGCCCTGGCCCTGCGCCTCGCCGAGCACCGCCTCCTCGGCGAGCACCACGGCGAGCCCCCCCTCCTCCTCGTGGACG
AGTGGGGGGAGGAGCTGGACGAGGCCCGCAGGCGGGCCGTCCTCGCCTACGCCGAGGCCCTGCCCCAGGCCATCCTGGCG
GGGCTGGAAGCCCCCCCGGGGGTGCCGGTATGCTCGGTGGTACGAGGGGTGGTCCTGTGCCCTGGCGCCTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recF | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
41.246 |
98.251 |
0.405 |