Detailed information NTG0097409

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB4Y54_RS00565
• Genome accession: NZ_AP031325
• Coordinates: 105315..106385 (+)
• Length: 356 a.a.
• NCBI ID: WP_353300418.1
• Uniprot ID: -
• Organism: Thermus thermophilus strain TF21
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 100315..111385

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4Y54_RS00545 (TthTF21_01040)	-	100823..101605 (+)	783	WP_014628894.1	RNA methyltransferase	-
AB4Y54_RS00550 (TthTF21_01050)	groES	101703..102008 (+)	306	WP_011174076.1	co-chaperone GroES	-
AB4Y54_RS00555 (TthTF21_01060)	groL	102021..103652 (+)	1632	WP_011174077.1	chaperonin GroEL	-
AB4Y54_RS00560 (TthTF21_01070)	-	103716..105248 (-)	1533	WP_353300417.1	thermostable carboxypeptidase 1	-
AB4Y54_RS00565 (TthTF21_01080)	pilD	105315..106385 (+)	1071	WP_353300418.1	prepilin peptidase	Machinery gene
AB4Y54_RS00570 (TthTF21_01090)	-	106423..106926 (+)	504	WP_011227820.1	DUF2939 domain-containing protein	-
AB4Y54_RS00575 (TthTF21_01100)	-	106940..107860 (+)	921	WP_353300419.1	nitroreductase family protein	-
AB4Y54_RS00580 (TthTF21_01110)	-	107814..108611 (-)	798	WP_353300420.1	LysM peptidoglycan-binding domain-containing protein	-
AB4Y54_RS00585 (TthTF21_01120)	-	108612..109370 (-)	759	WP_353300421.1	DUF721 domain-containing protein	-
AB4Y54_RS00590 (TthTF21_01130)	recF	109355..110386 (-)	1032	WP_353300422.1	DNA replication and repair protein RecF	Machinery gene

Sequence

Protein

• Length: 356 a.a.
• Molecular weight: 37993.23 Da
• Isoelectric Point: 7.7132

>NTDB_id=97409 AB4Y54_RS00565 WP_353300418.1 105315..106385(+) (pilD) [Thermus thermophilus strain TF21]
MWPLFALLLGLAVGSFLNVVVHRLPRGESVAYPPSRCPQCGHRLGPWDLVPVLSYLALKGRCRYCARPISPRYPLVEALT
GGLFLLASLFYPPGVEALLVFLFLAFLVALAFIDVDTFELPDPLTYGLLFLGLLASWALAFPLPFRESLDGSLMAAGGLA
LVAGYGNFFLRRFKEGRAEVPVGPHQVHMAALFGALLGPGVGMALAFLAWALSARTGRAVALPDRLTLPLLPLAFLLAPA
LGLDFLESLKGSLLAAGGLALAGGLYWAFRPLPEEGEEEEPVAMGYGDVKLLGALGAWLGPYAFLALFLGVFAGAPLGLL
LRQRKLPFGPYLALGGVVAFFFGEALWGAYLRLLGV

Nucleotide

• Length: 1071 bp

>NTDB_id=97409 AB4Y54_RS00565 WP_353300418.1 105315..106385(+) (pilD) [Thermus thermophilus strain TF21]
ATGTGGCCCCTCTTCGCCCTGCTCCTCGGCCTCGCGGTGGGTTCCTTTCTCAACGTGGTGGTCCACCGCCTGCCCCGGGG
GGAGTCCGTCGCCTACCCCCCGTCCCGCTGCCCCCAGTGCGGCCACCGCCTGGGGCCTTGGGACCTGGTCCCCGTCCTCT
CCTACCTCGCCCTAAAGGGGCGGTGCCGCTACTGCGCCCGTCCCATCTCCCCCCGCTACCCCCTGGTGGAGGCCCTCACG
GGGGGGCTTTTCCTCCTCGCAAGCCTCTTCTACCCCCCTGGGGTGGAGGCCCTCTTGGTCTTCCTCTTCCTCGCCTTTCT
CGTGGCCCTCGCCTTCATTGACGTGGACACCTTTGAGCTTCCCGATCCCCTCACCTACGGCCTCCTCTTCCTTGGGCTTT
TGGCCTCCTGGGCGCTGGCCTTCCCCCTCCCCTTTAGGGAGAGCCTGGACGGAAGCCTCATGGCCGCCGGGGGGCTCGCC
CTGGTGGCGGGGTACGGGAACTTTTTCCTGAGGCGCTTTAAGGAGGGGAGGGCCGAGGTCCCCGTGGGGCCCCACCAGGT
CCACATGGCGGCCCTCTTTGGGGCGCTCTTGGGCCCAGGGGTGGGGATGGCCCTCGCCTTCCTCGCTTGGGCCCTCTCCG
CCCGCACGGGGCGGGCGGTGGCCCTCCCCGACCGGCTCACCCTGCCCCTTTTGCCCCTCGCCTTCCTCCTTGCCCCCGCC
CTAGGCCTGGACTTCCTGGAAAGCCTTAAGGGAAGCCTCCTCGCTGCCGGGGGGCTCGCCCTCGCCGGGGGGCTTTACTG
GGCCTTCCGGCCCCTTCCCGAGGAGGGCGAGGAGGAGGAGCCCGTGGCCATGGGCTACGGGGACGTGAAGCTTCTGGGGG
CCCTCGGGGCCTGGCTTGGCCCTTACGCCTTCCTCGCCCTCTTCCTCGGGGTCTTCGCCGGGGCGCCTTTGGGCCTTCTC
CTTAGGCAAAGGAAGCTCCCCTTCGGCCCCTACCTCGCCCTCGGGGGGGTGGTGGCCTTCTTCTTCGGGGAGGCCCTCTG
GGGGGCGTACCTGCGCCTTCTGGGCGTTTGA

Domains

Predicted by InterProScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (8-88)

• Type IV leader peptidase family (Peptidase_A24) (207-319)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	44.909	100	0.483