Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AABD63_RS00275 Genome accession   NZ_CP150929
Coordinates   55637..57157 (-) Length   506 a.a.
NCBI ID   WP_109579894.1    Uniprot ID   -
Organism   Edwardsiella piscicida strain S16-567     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 50637..62157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD63_RS00255 (AABD63_00255) rfaF 51045..52106 (-) 1062 WP_012846963.1 ADP-heptose--LPS heptosyltransferase RfaF -
  AABD63_RS00260 (AABD63_00260) rfaD 52130..53059 (-) 930 WP_012846964.1 ADP-glyceromanno-heptose 6-epimerase -
  AABD63_RS00265 (AABD63_00265) - 53350..54546 (+) 1197 WP_012846965.1 glycine C-acetyltransferase -
  AABD63_RS00270 (AABD63_00270) tdh 54556..55581 (+) 1026 WP_012846966.1 L-threonine 3-dehydrogenase -
  AABD63_RS00275 (AABD63_00275) comM 55637..57157 (-) 1521 WP_109579894.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AABD63_RS00280 (AABD63_00280) - 57445..58680 (+) 1236 WP_073381385.1 MFS transporter -
  AABD63_RS00285 (AABD63_00285) ilvL 58808..58906 (+) 99 WP_071818493.1 ilv operon leader peptide -
  AABD63_RS00290 (AABD63_00290) ilvG 59044..60693 (+) 1650 WP_073381389.1 acetolactate synthase 2 catalytic subunit -
  AABD63_RS00295 (AABD63_00295) ilvM 60690..60980 (+) 291 WP_073381391.1 acetolactate synthase 2 small subunit -
  AABD63_RS00300 (AABD63_00300) - 61033..61962 (+) 930 WP_012846971.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53798.08 Da        Isoelectric Point: 8.9884

>NTDB_id=973924 AABD63_RS00275 WP_109579894.1 55637..57157(-) (comM) [Edwardsiella piscicida strain S16-567]
MTLATVYTRAALGIQAPEVRIEAHIGNGLPGFTLVGLPETAVREAKDRVRCAMLNSGFQFPPKRITLNLAPADLPKEGGR
YDLPMALALLLASEQLAPRVSVGDYEFIGELALSGDLRSVQGALPAALSAARAKRTLIAPSDNAAELGLLAAPRPPVAPS
LLAVCAFLSGQASLETAPAGEMTSDCAGAGDMTDIIGQAQARRALEIAAAGGHNLLLIGPPGTGKTMLACRLPGLLPPMT
PDEALEQAAISSLAYPGAMPPRYGVRPFRAPHHSASMAALIGGGPLPKPGEISLAHHGVLFLDELAEFDRRTLDALREPL
ESGVVHLSRARIKVSFPARVQLVAAMNPSSGGHADGRDRRAAPQQVLRYLSRLSGPLLDRFDLSIDVPPLSPGLLARQRA
DGEDSATLRRRVCAARARQYARGGRLNAHLEGAARDRDCRLAPDDALYLEQALTRLALSVRAWHRLLKVARTLADLEGCD
DIARRHLAEALSYRAMDRLLLSLQRG

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=973924 AABD63_RS00275 WP_109579894.1 55637..57157(-) (comM) [Edwardsiella piscicida strain S16-567]
ATGACTCTGGCCACTGTATACACGCGCGCCGCCCTGGGTATTCAAGCCCCCGAAGTCCGCATTGAGGCGCATATCGGCAA
CGGCCTACCGGGCTTTACCCTGGTGGGCCTGCCGGAAACAGCCGTACGCGAAGCCAAAGATCGGGTGCGCTGCGCCATGT
TGAACAGCGGATTTCAGTTCCCGCCGAAGCGCATTACGCTGAACCTGGCACCCGCCGATCTGCCTAAGGAAGGGGGGCGC
TACGATCTGCCGATGGCGCTGGCGCTGCTGCTGGCGTCCGAACAGCTGGCCCCACGCGTATCCGTTGGCGACTATGAATT
TATCGGCGAGCTGGCCCTGTCCGGCGATCTGCGTTCAGTACAGGGGGCGCTGCCCGCCGCGCTGAGCGCCGCCCGCGCGA
AGCGCACCCTAATAGCGCCCAGTGATAACGCGGCGGAGCTCGGGCTGCTGGCAGCCCCTCGTCCCCCTGTCGCGCCGTCG
CTGCTGGCCGTCTGCGCCTTTCTGAGCGGCCAGGCATCCCTAGAGACCGCGCCGGCCGGCGAGATGACGAGCGACTGCGC
GGGCGCCGGCGATATGACCGACATTATCGGTCAGGCGCAGGCGCGACGGGCGCTGGAGATCGCCGCCGCCGGTGGACATA
ATCTACTGCTGATCGGGCCGCCGGGCACCGGTAAAACCATGCTGGCCTGTCGCCTGCCGGGCCTGCTGCCGCCGATGACC
CCGGATGAGGCGCTAGAGCAGGCGGCCATCAGCAGCCTAGCCTACCCGGGCGCAATGCCGCCGCGCTATGGCGTGCGCCC
CTTTCGCGCGCCACACCACAGCGCCTCCATGGCCGCGCTGATCGGCGGGGGGCCGCTGCCGAAGCCCGGCGAGATCTCGC
TGGCCCATCACGGCGTCCTGTTTCTTGACGAGCTGGCCGAATTCGATCGACGAACCCTGGACGCCCTGCGCGAACCGCTG
GAGTCCGGCGTCGTCCACCTGTCTCGCGCCAGGATAAAGGTCAGCTTTCCCGCCCGAGTACAGCTGGTGGCGGCCATGAA
CCCCAGCAGCGGTGGCCACGCTGACGGACGCGATCGCCGGGCGGCGCCACAGCAGGTACTAAGATACCTCTCCCGGCTGT
CCGGCCCCCTGCTTGACCGCTTCGATCTGTCGATTGATGTGCCGCCGCTGTCACCGGGACTGCTGGCTCGCCAGCGGGCG
GATGGCGAAGACAGTGCGACTCTGCGCCGACGCGTGTGCGCCGCTCGGGCGCGGCAGTACGCCCGCGGCGGCCGGCTCAA
TGCGCATCTGGAGGGTGCCGCCCGCGATCGCGACTGCCGGCTGGCGCCGGACGATGCCCTCTATCTGGAGCAGGCGCTCA
CGCGCCTGGCGCTATCGGTACGCGCTTGGCATCGGCTGCTGAAAGTCGCACGTACGCTGGCGGATCTGGAAGGATGCGAT
GACATTGCACGCCGCCATCTGGCCGAGGCCCTGAGCTACCGCGCTATGGATCGGCTACTGCTCTCCCTGCAGCGGGGCTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.449

99.407

0.581
  comM Haemophilus influenzae Rd KW20

57.396

100

0.575
  comM Vibrio campbellii strain DS40M4

57.455

99.407

0.571
  comM Glaesserella parasuis strain SC1401

55.686

100

0.561
  comM Legionella pneumophila str. Paris

46.894

98.617

0.462
  comM Legionella pneumophila strain ERS1305867

46.894

98.617

0.462
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.717

100

0.429

Multiple sequence alignment