Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | AABD49_RS01615 | Genome accession | NZ_CP150909 |
| Coordinates | 339127..339720 (+) | Length | 197 a.a. |
| NCBI ID | WP_005496571.1 | Uniprot ID | A0A0F2HLP7 |
| Organism | Vibrio parahaemolyticus strain vp-HL-202008 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 334127..344720
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AABD49_RS01600 (AABD49_01600) | - | 334843..337413 (-) | 2571 | WP_069535787.1 | PBP1A family penicillin-binding protein | - |
| AABD49_RS01605 (AABD49_01605) | pilM | 337556..338572 (+) | 1017 | WP_031821574.1 | type IV pilus assembly protein PilM | Machinery gene |
| AABD49_RS01610 (AABD49_01610) | pilN | 338556..339134 (+) | 579 | WP_015297396.1 | PilN domain-containing protein | Machinery gene |
| AABD49_RS01615 (AABD49_01615) | pilO | 339127..339720 (+) | 594 | WP_005496571.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| AABD49_RS01620 (AABD49_01620) | pilP | 339710..340225 (+) | 516 | WP_005454781.1 | pilus assembly protein PilP | Machinery gene |
| AABD49_RS01625 (AABD49_01625) | pilQ | 340257..342005 (+) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| AABD49_RS01630 (AABD49_01630) | aroK | 342194..342712 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| AABD49_RS01635 (AABD49_01635) | aroB | 342744..343844 (+) | 1101 | WP_069535786.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23019.57 Da Isoelectric Point: 4.9419
>NTDB_id=973672 AABD49_RS01615 WP_005496571.1 339127..339720(+) (pilO) [Vibrio parahaemolyticus strain vp-HL-202008]
MVNWQDLEMDEIAEWPLLPQLVVICLLVLLIQGFGYWFYLKPEEARLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDGK
MVNWQDLEMDEIAEWPLLPQLVVICLLVLLIQGFGYWFYLKPEEARLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDGK
Nucleotide
Download Length: 594 bp
>NTDB_id=973672 AABD49_RS01615 WP_005496571.1 339127..339720(+) (pilO) [Vibrio parahaemolyticus strain vp-HL-202008]
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGCT
TGTTCTTCTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTGGCATTGCGCATAAAAGCCAACAAGGTGGCTGCATTGCCTCAATTGCAATCTCAACTGGACGAG
CTCACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAACAAGTTAACGTTTACTCGAATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CACTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACACTGCCACGCATCATC
ACCTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGGGAAATAA
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGCT
TGTTCTTCTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTGGCATTGCGCATAAAAGCCAACAAGGTGGCTGCATTGCCTCAATTGCAATCTCAACTGGACGAG
CTCACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAACAAGTTAACGTTTACTCGAATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CACTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACACTGCCACGCATCATC
ACCTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGGGAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
94.211 |
96.447 |
0.909 |
| pilO | Vibrio cholerae strain A1552 |
73.298 |
96.954 |
0.711 |