Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   AABD47_RS02955 Genome accession   NZ_CP150902
Coordinates   605217..605831 (-) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain vp-HL-202006     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 600217..610831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD47_RS02945 (AABD47_02945) aceF 601507..603393 (+) 1887 WP_031847487.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  AABD47_RS02950 (AABD47_02950) lpdA 603662..605089 (+) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  AABD47_RS02955 (AABD47_02955) opaR 605217..605831 (-) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  AABD47_RS02960 (AABD47_02960) hpt 606150..606680 (+) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  AABD47_RS02965 (AABD47_02965) can 606754..607422 (-) 669 WP_005462578.1 carbonate dehydratase -
  AABD47_RS02970 (AABD47_02970) - 607706..609376 (+) 1671 WP_069536421.1 SulP family inorganic anion transporter -
  AABD47_RS02975 (AABD47_02975) - 609629..610546 (+) 918 WP_005462584.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=973643 AABD47_RS02955 WP_005479697.1 605217..605831(-) (opaR) [Vibrio parahaemolyticus strain vp-HL-202006]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=973643 AABD47_RS02955 WP_005479697.1 605217..605831(-) (opaR) [Vibrio parahaemolyticus strain vp-HL-202006]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GACAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTACTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
GGAACTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701

Multiple sequence alignment