Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | WN982_RS18280 | Genome accession | NZ_CP150900 |
| Coordinates | 4026780..4027904 (+) | Length | 374 a.a. |
| NCBI ID | WP_341313314.1 | Uniprot ID | A0AAU6QKM2 |
| Organism | Paraburkholderia sp. IMGN_8 strain SJ_3 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4021780..4032904
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WN982_RS18250 (WN982_18250) | - | 4022385..4023005 (+) | 621 | WP_341313308.1 | 50S ribosomal protein L25/general stress protein Ctc | - |
| WN982_RS18255 (WN982_18255) | pth | 4023147..4023749 (+) | 603 | WP_341313309.1 | aminoacyl-tRNA hydrolase | - |
| WN982_RS18260 (WN982_18260) | hisC | 4023813..4024892 (+) | 1080 | WP_341313310.1 | histidinol-phosphate transaminase | - |
| WN982_RS18265 (WN982_18265) | - | 4024976..4025233 (-) | 258 | WP_341313311.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| WN982_RS18270 (WN982_18270) | coaD | 4025297..4025812 (-) | 516 | WP_341313312.1 | pantetheine-phosphate adenylyltransferase | - |
| WN982_RS18275 (WN982_18275) | rsmD | 4025925..4026539 (-) | 615 | WP_341313313.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| WN982_RS18280 (WN982_18280) | pilA | 4026780..4027904 (+) | 1125 | WP_341313314.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| WN982_RS18285 (WN982_18285) | maiA | 4027972..4028616 (-) | 645 | WP_341313315.1 | maleylacetoacetate isomerase | - |
| WN982_RS18290 (WN982_18290) | - | 4028641..4029339 (-) | 699 | WP_341313316.1 | fumarylacetoacetate hydrolase family protein | - |
| WN982_RS18295 (WN982_18295) | ybiB | 4029557..4030528 (+) | 972 | WP_341315838.1 | DNA-binding protein YbiB | - |
| WN982_RS18300 (WN982_18300) | - | 4031041..4032024 (+) | 984 | Protein_3596 | 2-isopropylmalate synthase | - |
| WN982_RS18305 (WN982_18305) | - | 4032241..4032624 (-) | 384 | WP_341313317.1 | nuclear transport factor 2 family protein | - |
Sequence
Protein
Download Length: 374 a.a. Molecular weight: 39737.47 Da Isoelectric Point: 4.8003
>NTDB_id=973621 WN982_RS18280 WP_341313314.1 4026780..4027904(+) (pilA) [Paraburkholderia sp. IMGN_8 strain SJ_3]
MFSFFKRFKGSKESDNAPEESQTAPEGLAPETAVEAPAAPAVQPAATAPANEPQPDELTPETVEIVPPPVQDAGAKRSWL
TRLKTGLSKTSSSLTGIFVGTKIDEDLYEELETALLMSDAGVDATEFLLESLREKVRAERLTDPQQVKTALRTLLVGLLK
PLESSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGQRNNVTVVSQESGDPA
AVIFDAVGAARARKIDVLMADTAGRLPTQLHLMEELRKVKRVIGKAQDGAPHEVLLVIDANTGQNALAQVKAFDDALGLT
GLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFSDALLGA
MFSFFKRFKGSKESDNAPEESQTAPEGLAPETAVEAPAAPAVQPAATAPANEPQPDELTPETVEIVPPPVQDAGAKRSWL
TRLKTGLSKTSSSLTGIFVGTKIDEDLYEELETALLMSDAGVDATEFLLESLREKVRAERLTDPQQVKTALRTLLVGLLK
PLESSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGQRNNVTVVSQESGDPA
AVIFDAVGAARARKIDVLMADTAGRLPTQLHLMEELRKVKRVIGKAQDGAPHEVLLVIDANTGQNALAQVKAFDDALGLT
GLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFSDALLGA
Nucleotide
Download Length: 1125 bp
>NTDB_id=973621 WN982_RS18280 WP_341313314.1 4026780..4027904(+) (pilA) [Paraburkholderia sp. IMGN_8 strain SJ_3]
ATGTTCAGCTTTTTCAAACGATTCAAGGGTTCGAAAGAGTCCGATAACGCGCCAGAAGAATCGCAGACGGCGCCGGAAGG
CTTAGCGCCCGAGACCGCCGTAGAGGCGCCGGCAGCGCCCGCGGTGCAGCCGGCAGCCACTGCGCCGGCAAACGAGCCGC
AGCCTGACGAGCTCACGCCGGAAACCGTCGAAATCGTCCCGCCGCCGGTACAGGACGCGGGTGCGAAGCGATCCTGGCTG
ACGCGCCTGAAAACCGGCCTGTCGAAGACGAGTTCGAGCCTGACCGGTATTTTCGTCGGCACGAAGATCGACGAGGACCT
GTACGAAGAACTGGAAACCGCGCTGCTGATGTCGGATGCGGGCGTCGACGCTACCGAATTCCTGCTTGAATCGTTGCGTG
AGAAAGTGCGCGCCGAGCGCCTCACCGACCCGCAACAGGTGAAAACGGCGCTGCGCACGCTGCTGGTCGGTCTTCTCAAG
CCGCTGGAAAGCTCGCTGATGCTCGGCCGCGCGCAACCGCTCGTGATGATGATCGCCGGCGTGAACGGCGCGGGCAAGAC
CACCAGCATCGGCAAACTCGCCAAGCATCTGCAGAGCTTCGATCAATCGGTGCTGTTGGCCGCGGGCGATACCTTCCGCG
CCGCCGCGCGCGAGCAACTGGCTATCTGGGGACAGCGCAACAACGTGACGGTGGTGTCGCAGGAAAGCGGCGATCCGGCA
GCGGTGATCTTCGACGCGGTCGGCGCCGCCCGTGCGCGCAAGATCGACGTGCTGATGGCCGACACCGCCGGCCGTCTGCC
GACCCAACTGCACCTCATGGAAGAACTGCGCAAGGTGAAGCGCGTGATCGGCAAGGCGCAAGACGGCGCGCCGCACGAAG
TGCTGCTGGTGATCGACGCGAACACCGGCCAGAACGCGCTCGCCCAGGTGAAAGCGTTTGACGATGCGCTCGGCCTCACC
GGCCTGATCGTGACCAAGCTCGACGGCACGGCCAAGGGCGGCATTCTTGCGGCGATCGCGCGGCAGCGTCCGATTCCGGT
GTACTTCATCGGCGTCGGCGAAAAGGTTGAGGATTTGCAGCCGTTTAGCGCGGAAGAGTTTTCGGACGCGTTGCTGGGCG
CTTGA
ATGTTCAGCTTTTTCAAACGATTCAAGGGTTCGAAAGAGTCCGATAACGCGCCAGAAGAATCGCAGACGGCGCCGGAAGG
CTTAGCGCCCGAGACCGCCGTAGAGGCGCCGGCAGCGCCCGCGGTGCAGCCGGCAGCCACTGCGCCGGCAAACGAGCCGC
AGCCTGACGAGCTCACGCCGGAAACCGTCGAAATCGTCCCGCCGCCGGTACAGGACGCGGGTGCGAAGCGATCCTGGCTG
ACGCGCCTGAAAACCGGCCTGTCGAAGACGAGTTCGAGCCTGACCGGTATTTTCGTCGGCACGAAGATCGACGAGGACCT
GTACGAAGAACTGGAAACCGCGCTGCTGATGTCGGATGCGGGCGTCGACGCTACCGAATTCCTGCTTGAATCGTTGCGTG
AGAAAGTGCGCGCCGAGCGCCTCACCGACCCGCAACAGGTGAAAACGGCGCTGCGCACGCTGCTGGTCGGTCTTCTCAAG
CCGCTGGAAAGCTCGCTGATGCTCGGCCGCGCGCAACCGCTCGTGATGATGATCGCCGGCGTGAACGGCGCGGGCAAGAC
CACCAGCATCGGCAAACTCGCCAAGCATCTGCAGAGCTTCGATCAATCGGTGCTGTTGGCCGCGGGCGATACCTTCCGCG
CCGCCGCGCGCGAGCAACTGGCTATCTGGGGACAGCGCAACAACGTGACGGTGGTGTCGCAGGAAAGCGGCGATCCGGCA
GCGGTGATCTTCGACGCGGTCGGCGCCGCCCGTGCGCGCAAGATCGACGTGCTGATGGCCGACACCGCCGGCCGTCTGCC
GACCCAACTGCACCTCATGGAAGAACTGCGCAAGGTGAAGCGCGTGATCGGCAAGGCGCAAGACGGCGCGCCGCACGAAG
TGCTGCTGGTGATCGACGCGAACACCGGCCAGAACGCGCTCGCCCAGGTGAAAGCGTTTGACGATGCGCTCGGCCTCACC
GGCCTGATCGTGACCAAGCTCGACGGCACGGCCAAGGGCGGCATTCTTGCGGCGATCGCGCGGCAGCGTCCGATTCCGGT
GTACTTCATCGGCGTCGGCGAAAAGGTTGAGGATTTGCAGCCGTTTAGCGCGGAAGAGTTTTCGGACGCGTTGCTGGGCG
CTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
53.589 |
100 |
0.599 |