Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   WOB24_RS03055 Genome accession   NZ_CP150891
Coordinates   632276..633640 (+) Length   454 a.a.
NCBI ID   WP_341304555.1    Uniprot ID   -
Organism   Pseudomonas sp. TMP25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 627276..638640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WOB24_RS03030 (WOB24_03030) - 629062..630087 (-) 1026 WP_339081265.1 CNNM domain-containing protein -
  WOB24_RS03035 (WOB24_03035) mscL 630236..630649 (-) 414 WP_339081267.1 large-conductance mechanosensitive channel protein MscL -
  WOB24_RS03040 (WOB24_03040) - 630718..631464 (-) 747 WP_341304553.1 EAL domain-containing protein -
  WOB24_RS03045 (WOB24_03045) - 631600..631842 (+) 243 WP_341304554.1 DUF465 domain-containing protein -
  WOB24_RS03050 (WOB24_03050) - 631929..632174 (+) 246 WP_339081273.1 DUF465 domain-containing protein -
  WOB24_RS03055 (WOB24_03055) radA 632276..633640 (+) 1365 WP_341304555.1 DNA repair protein RadA Machinery gene
  WOB24_RS03060 (WOB24_03060) - 633698..634069 (-) 372 WP_339083381.1 PilZ domain-containing protein -
  WOB24_RS03065 (WOB24_03065) ppa 634278..634805 (-) 528 WP_339081277.1 inorganic diphosphatase -
  WOB24_RS03070 (WOB24_03070) - 634882..635721 (-) 840 WP_341304556.1 M90 family metallopeptidase -
  WOB24_RS03075 (WOB24_03075) - 635832..637424 (+) 1593 WP_341304557.1 protein kinase -
  WOB24_RS03080 (WOB24_03080) - 637558..638025 (-) 468 WP_339081283.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48803.53 Da        Isoelectric Point: 7.1321

>NTDB_id=973517 WOB24_RS03055 WP_341304555.1 632276..633640(+) (radA) [Pseudomonas sp. TMP25]
MAKAKRMYGCTECGATFPKWAGQCGECGVWNTLVETLLEANGVTPNGRAGWAGERVQIKTLAEVSVEEMPRFSTASGELD
RVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRFPALYVTGEESQQQVAMRARRLGLPEDKLKVMTETCIESIIAT
ARIEKPKVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLVRFAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEG
ESDGRLRLLRAVKNRFGAINELGVFGMTDRGLKEVTNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDTSHMAN
PRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVISSLRNKPLPHDLLVFGEVGLSGE
IRPVPSGQERLKEAAKHGFKRAIVPKGNAPKDPPPGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=973517 WOB24_RS03055 WP_341304555.1 632276..633640(+) (radA) [Pseudomonas sp. TMP25]
ATGGCCAAGGCCAAGCGTATGTATGGCTGCACCGAGTGTGGCGCGACCTTTCCCAAATGGGCCGGCCAGTGCGGCGAGTG
CGGTGTGTGGAATACCTTGGTTGAGACCCTGCTCGAGGCCAATGGGGTAACGCCCAATGGGCGAGCCGGTTGGGCGGGCG
AGAGGGTCCAAATCAAGACCTTGGCCGAGGTCAGTGTCGAAGAAATGCCGCGTTTCTCCACGGCATCCGGAGAGTTAGAC
CGGGTGCTCGGCGGCGGTCTGGTGGACGGCTCGGTTGTACTGATCGGCGGTGACCCTGGTATCGGCAAATCAACCATCCT
GCTGCAAACCTTGTGCAACATCGCCACGCGTTTCCCTGCGCTTTACGTGACGGGCGAAGAATCCCAACAGCAGGTGGCCA
TGCGTGCTCGCCGCTTGGGTTTGCCAGAAGACAAACTCAAGGTCATGACCGAAACCTGCATCGAAAGCATCATCGCCACC
GCGCGCATAGAAAAGCCCAAGGTGATGGTGATCGACTCAATCCAAACCATCTTCACCGAGCAACTGCAATCGGCTCCTGG
TGGCGTCGCCCAGGTGCGCGAGAGTGCGGCATTGCTGGTGCGCTTCGCTAAACAAAGCGGCACGGCGATTTTTCTGGTTG
GTCACGTGACCAAGGAAGGTGCGCTGGCTGGCCCACGCGTGCTCGAACACATGGTCGACACCGTGTTGTATTTCGAGGGT
GAGTCTGACGGTCGCCTGCGATTGCTGCGTGCAGTGAAGAACCGCTTTGGCGCGATTAATGAACTGGGCGTATTCGGCAT
GACCGACCGGGGCCTGAAAGAAGTTACCAACCCTTCGGCGATCTTCCTCACCCGCGCCCAAGAAGAAGTGCCCGGCAGCG
TGGTGATGGCCACTTGGGAAGGAACCCGGCCGATGCTGGTTGAGGTGCAGGCGTTGGTCGATACCAGTCATATGGCCAAC
CCACGGCGGGTGACCTTGGGTTTAGATCAGAATCGACTGGCCATGCTGCTGGCGGTGCTGCACCGGCACGGCGGCATCCC
CACCCACGATCAGGATGTTTTTCTCAACGTGGTCGGCGGGGTCAAGGTGTTGGAAACCGCCTCTGACTTGGCGCTCATGG
CGGCGGTGATCTCCAGCTTACGAAACAAGCCGTTGCCGCATGATCTGTTGGTGTTCGGCGAGGTAGGTTTGTCTGGCGAA
ATTCGCCCAGTGCCGAGCGGGCAGGAGCGTTTGAAGGAGGCGGCGAAACACGGCTTCAAGCGCGCCATCGTACCCAAGGG
CAATGCGCCAAAGGATCCGCCGCCCGGTTTGCAAGTGATTGCTGTCACGCGGCTGGAACAAGCGCTGGACGCGTTGTTTG
AGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(352-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(79-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.465

100

0.487
  radA Streptococcus mitis SK321

47.692

100

0.478
  radA Streptococcus mitis NCTC 12261

47.473

100

0.476
  radA Streptococcus pneumoniae Rx1

47.473

100

0.476
  radA Streptococcus pneumoniae D39

47.473

100

0.476
  radA Streptococcus pneumoniae R6

47.473

100

0.476
  radA Streptococcus pneumoniae TIGR4

47.473

100

0.476

Multiple sequence alignment