Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   WJM97_RS07575 Genome accession   NZ_CP150886
Coordinates   1739194..1741206 (-) Length   670 a.a.
NCBI ID   WP_353932429.1    Uniprot ID   -
Organism   Okeanomitos corallinicola TIOX110     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1734194..1746206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJM97_RS07550 (WJM97_07530) - 1734404..1734634 (-) 231 WP_353932424.1 addiction module protein -
  WJM97_RS07555 (WJM97_07535) - 1734804..1735799 (+) 996 WP_353932425.1 saccharopine dehydrogenase-like oxidoreductase -
  WJM97_RS07560 (WJM97_07540) - 1735869..1736417 (-) 549 WP_353932426.1 hypothetical protein -
  WJM97_RS07565 (WJM97_07545) - 1736622..1737842 (-) 1221 WP_353932427.1 type II secretion system F family protein -
  WJM97_RS07570 (WJM97_07550) pilT 1737984..1739099 (-) 1116 WP_353932428.1 type IV pilus twitching motility protein PilT Machinery gene
  WJM97_RS07575 (WJM97_07555) pilB/pilB1 1739194..1741206 (-) 2013 WP_353932429.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  WJM97_RS07580 (WJM97_07560) grpE 1741646..1742392 (+) 747 WP_353932430.1 nucleotide exchange factor GrpE -
  WJM97_RS07585 (WJM97_07565) dnaK 1742690..1744678 (+) 1989 WP_353932431.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 670 a.a.        Molecular weight: 74858.83 Da        Isoelectric Point: 5.0637

>NTDB_id=973457 WJM97_RS07575 WP_353932429.1 1739194..1741206(-) (pilB/pilB1) [Okeanomitos corallinicola TIOX110]
MTYSSPQRRSTALTTRTEFSPFGNKLVQSGYVDNEQMRQALAESRKSGKMLTDVLESITGKELAPEFLREYKKQHLFELK
ILYGVESIDPEVNEVGNITVGKLIENLIPVDVCRRHRLVPLVKREQENPPYVLVAMVDPDNLEACDDLSRILRSQGLSLQ
RMVITQEDYQRLINQYLDEFAVKQEKLQQEKLTDISQDIESLNQDMIQEVAEDSEVDLTVAMKDADDAPIINLANKILFV
ALRDGVSDIHIEPQEESLRIRFRKDGVLRESEAIRPMPKHIVPAVTARFKIISNLDIAERRLPQDGRIRRVFDGRKVDFR
VNTLPSRYGEKICLRILDNSSTQLGLDKLITDPVTLKIVQDMVSKPFGLILVTGPTGSGKTTSLYSALAEVNDPGINIST
VEDPVEYSLPGLTQVQVIREKGLDFATALRAFLRQDPDVLLVGETRDKETAKTAIEAALTGHLVLTTLHTNDAPGAIARL
GEMGIEPFMVSSSLIGVLAQRLVRRVCSDCRIPYTPTSEQLARYGLSASQEGAVTFYKPNTLSPEVVAEGKTKVCPKCGG
IGYKGRCGVYEVMRITENLQTLINQEAPTERIKEVAVEEGMKTLLAYSLDLVRQGATTLEEVERVTFTDTGLEAELKAKR
KSGLTCKTCDATLQPEWLDCPYCLTPRFQD

Nucleotide


Download         Length: 2013 bp        

>NTDB_id=973457 WJM97_RS07575 WP_353932429.1 1739194..1741206(-) (pilB/pilB1) [Okeanomitos corallinicola TIOX110]
ATGACTTACTCATCACCACAACGGCGCAGTACCGCTCTGACCACAAGAACAGAGTTTTCACCTTTCGGCAACAAGTTGGT
GCAATCTGGCTATGTTGACAATGAACAGATGAGACAGGCTTTAGCTGAAAGCCGTAAATCTGGCAAAATGTTGACAGATG
TATTGGAGTCAATTACTGGCAAAGAACTCGCTCCTGAGTTTCTGCGAGAATACAAGAAGCAGCATTTATTTGAACTAAAA
ATACTATACGGTGTTGAATCCATCGATCCCGAAGTCAACGAAGTTGGCAATATAACGGTGGGAAAATTGATTGAAAATTT
AATACCAGTAGATGTTTGTCGTCGTCACCGTTTAGTACCTCTGGTCAAACGGGAACAAGAAAACCCGCCTTATGTCCTGG
TAGCGATGGTTGATCCAGATAATCTGGAAGCCTGTGATGACCTCAGTCGCATTTTACGTTCTCAGGGGTTGTCCTTACAA
CGGATGGTAATTACCCAAGAAGATTACCAGCGGTTAATTAACCAATATCTAGATGAGTTTGCTGTTAAACAAGAAAAGTT
ACAGCAAGAAAAATTAACAGACATTTCTCAGGATATCGAAAGTCTGAATCAAGACATGATTCAGGAAGTTGCGGAAGATT
CAGAGGTGGATCTGACAGTAGCCATGAAGGATGCTGATGATGCGCCTATTATCAATCTTGCCAATAAAATTCTGTTTGTC
GCTTTGCGAGATGGTGTCTCTGATATTCACATTGAACCCCAGGAAGAAAGCTTACGCATTCGTTTCCGGAAGGATGGGGT
ATTACGTGAATCGGAAGCTATCCGACCCATGCCTAAGCACATTGTCCCAGCGGTGACGGCTCGATTTAAAATTATCTCTA
ATTTAGATATTGCGGAACGACGTTTACCTCAAGATGGTCGTATTCGTCGGGTATTTGATGGTAGAAAAGTAGACTTCCGG
GTTAATACTCTACCTAGTCGTTATGGGGAAAAAATCTGTTTACGGATTTTGGATAACTCATCTACCCAATTAGGTCTTGA
TAAATTAATTACCGATCCAGTGACTTTAAAAATCGTCCAGGATATGGTTAGTAAACCTTTTGGGTTGATTTTAGTAACAG
GTCCGACTGGTTCTGGTAAAACGACTTCGTTGTATTCTGCCTTAGCAGAAGTAAATGATCCAGGAATTAATATTAGTACG
GTAGAAGATCCGGTGGAGTACAGTTTACCGGGACTGACCCAAGTACAGGTAATTCGGGAAAAGGGACTGGACTTTGCTAC
CGCACTGCGGGCATTTTTAAGACAAGATCCTGATGTGTTACTGGTGGGTGAAACACGGGATAAAGAAACGGCGAAAACAG
CGATTGAAGCGGCACTCACAGGTCACTTAGTATTAACTACCTTACACACTAATGATGCTCCTGGGGCGATCGCTCGTTTG
GGAGAAATGGGAATTGAACCTTTCATGGTTTCTAGTTCTCTCATTGGTGTGTTAGCACAACGTTTAGTACGCCGGGTCTG
TTCAGATTGTCGTATTCCCTACACTCCCACCTCTGAACAATTAGCTCGCTATGGTTTATCAGCTTCTCAAGAAGGTGCTG
TCACTTTTTATAAACCCAATACCCTATCCCCAGAAGTAGTAGCTGAAGGTAAAACAAAGGTTTGTCCTAAATGTGGTGGC
ATTGGCTACAAGGGACGTTGTGGTGTGTATGAGGTAATGCGGATTACGGAAAACTTACAAACCTTAATTAACCAAGAAGC
TCCCACAGAACGCATCAAGGAAGTTGCTGTGGAAGAAGGGATGAAAACCTTACTTGCTTACAGTCTTGACTTAGTCCGTC
AAGGTGCAACAACCCTAGAAGAAGTTGAACGGGTGACATTCACTGATACAGGTTTGGAAGCTGAATTAAAAGCCAAGCGT
AAAAGTGGCTTGACCTGTAAAACTTGTGATGCCACATTACAACCAGAATGGTTAGATTGTCCCTACTGTTTAACACCTCG
TTTTCAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(236-505)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(26-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

63.501

100

0.639

Multiple sequence alignment