Detailed information
Bioinformatically predicted
Overview
| Name | opaR | Type | Regulator |
| Locus tag | WMZ02_RS13295 | Genome accession | NZ_CP150864 |
| Coordinates | 2847237..2847851 (+) | Length | 204 a.a. |
| NCBI ID | WP_005479697.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain NJIFDCVp7 | ||
| Function | regulation of Dns (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2842237..2852851
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WMZ02_RS13275 (WMZ02_13275) | - | 2842521..2843438 (-) | 918 | WP_005462584.1 | ABC transporter ATP-binding protein | - |
| WMZ02_RS13280 (WMZ02_13280) | - | 2843691..2845361 (-) | 1671 | WP_021450011.1 | SulP family inorganic anion transporter | - |
| WMZ02_RS13285 (WMZ02_13285) | can | 2845645..2846313 (+) | 669 | WP_005462578.1 | carbonate dehydratase | - |
| WMZ02_RS13290 (WMZ02_13290) | hpt | 2846388..2846918 (-) | 531 | WP_005479701.1 | hypoxanthine phosphoribosyltransferase | - |
| WMZ02_RS13295 (WMZ02_13295) | opaR | 2847237..2847851 (+) | 615 | WP_005479697.1 | transcriptional regulator OpaR | Regulator |
| WMZ02_RS13300 (WMZ02_13300) | lpdA | 2847979..2849406 (-) | 1428 | WP_005479684.1 | dihydrolipoyl dehydrogenase | - |
| WMZ02_RS13305 (WMZ02_13305) | aceF | 2849675..2851561 (-) | 1887 | WP_346338041.1 | pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase | - |
Sequence
Protein
Download Length: 204 a.a. Molecular weight: 23634.94 Da Isoelectric Point: 6.0781
>NTDB_id=973173 WMZ02_RS13295 WP_005479697.1 2847237..2847851(+) (opaR) [Vibrio parahaemolyticus strain NJIFDCVp7]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH
Nucleotide
Download Length: 615 bp
>NTDB_id=973173 WMZ02_RS13295 WP_005479697.1 2847237..2847851(+) (opaR) [Vibrio parahaemolyticus strain NJIFDCVp7]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATAGCTTTAGA
AGTATTTGCACGCCGCGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAATCATGTTGTACGTCAGTTCTCGAATTTCCTTTCG
GATAACATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTGAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTACTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCACTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATAGCTTTAGA
AGTATTTGCACGCCGCGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAATCATGTTGTACGTCAGTTCTCGAATTTCCTTTCG
GATAACATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTGAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTACTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCACTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| opaR | Vibrio parahaemolyticus RIMD 2210633 |
100 |
100 |
1 |
| hapR | Vibrio cholerae C6706 |
72.222 |
97.059 |
0.701 |
| hapR | Vibrio cholerae strain A1552 |
72.222 |
97.059 |
0.701 |