Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   AABD50_RS02930 Genome accession   NZ_CP150862
Coordinates   600007..600621 (-) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain vp-201911     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 595007..605621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD50_RS02920 (AABD50_02920) aceF 596297..598183 (+) 1887 WP_031830968.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  AABD50_RS02925 (AABD50_02925) lpdA 598452..599879 (+) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  AABD50_RS02930 (AABD50_02930) opaR 600007..600621 (-) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  AABD50_RS02935 (AABD50_02935) hpt 600940..601470 (+) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  AABD50_RS02940 (AABD50_02940) can 601544..602212 (-) 669 WP_005462578.1 carbonate dehydratase -
  AABD50_RS02945 (AABD50_02945) - 602496..604166 (+) 1671 WP_025792850.1 SulP family inorganic anion transporter -
  AABD50_RS02950 (AABD50_02950) - 604418..605335 (+) 918 WP_005462584.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=973131 AABD50_RS02930 WP_005479697.1 600007..600621(-) (opaR) [Vibrio parahaemolyticus strain vp-201911]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=973131 AABD50_RS02930 WP_005479697.1 600007..600621(-) (opaR) [Vibrio parahaemolyticus strain vp-201911]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAATCATGTTGTACGTCAGTTCTCGAACTTCCTTTCG
GATAACATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTGAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTACTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCACTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701

Multiple sequence alignment