Detailed information NTG0973128

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AABD50_RS02880
• Genome accession: NZ_CP150862
• Coordinates: 586277..587146 (-)
• Length: 289 a.a.
• NCBI ID: WP_169608825.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain vp-201911
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 581277..592146

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABD50_RS02845 (AABD50_02845)	rpsP	582310..582558 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
AABD50_RS02850 (AABD50_02850)	rimM	582587..583135 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
AABD50_RS02855 (AABD50_02855)	trmD	583163..583906 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
AABD50_RS02860 (AABD50_02860)	rplS	583948..584301 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
AABD50_RS02865 (AABD50_02865)	yacG	584631..584825 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
AABD50_RS02870 (AABD50_02870)	zapD	584894..585634 (-)	741	WP_023624252.1	cell division protein ZapD	-
AABD50_RS02875 (AABD50_02875)	coaE	585662..586276 (-)	615	WP_005480887.1	dephospho-CoA kinase	-
AABD50_RS02880 (AABD50_02880)	pilD	586277..587146 (-)	870	WP_169608825.1	A24 family peptidase	Machinery gene
AABD50_RS02885 (AABD50_02885)	pilC	587211..588434 (-)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
AABD50_RS02890 (AABD50_02890)	pilB	588458..590143 (-)	1686	WP_169608822.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AABD50_RS02895 (AABD50_02895)	-	590140..590598 (-)	459	WP_169608820.1	pilin	-
AABD50_RS02900 (AABD50_02900)	nadC	590861..591748 (-)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32451.54 Da
• Isoelectric Point: 7.2155

>NTDB_id=973128 AABD50_RS02880 WP_169608825.1 586277..587146(-) (pilD) [Vibrio parahaemolyticus strain vp-201911]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRREYAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=973128 AABD50_RS02880 WP_169608825.1 586277..587146(-) (pilD) [Vibrio parahaemolyticus strain vp-201911]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATACGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTGAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTATCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTATGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCCGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAAAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	72.917	99.654	0.727
pilD	Acinetobacter baumannii D1279779	51.866	92.734	0.481
pilD	Acinetobacter nosocomialis M2	51.493	92.734	0.478
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446