Detailed information NTG0097301

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AACK07_RS03450
• Genome accession: NZ_AP029012
• Coordinates: 740000..740881 (-)
• Length: 293 a.a.
• NCBI ID: WP_029240316.1
• Uniprot ID: A0ABX7ZX66
• Organism: Ralstonia pseudosolanacearum strain MAFF 301069
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 735000..745881

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AACK07_RS03420 (MAFF301069_06650)	argJ	735710..736939 (+)	1230	WP_011002739.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
AACK07_RS03425 (MAFF301069_06660)	-	736955..737839 (+)	885	WP_019718219.1	ATP-binding protein	-
AACK07_RS03430 (MAFF301069_06670)	-	737817..738278 (+)	462	WP_023470258.1	NUDIX domain-containing protein	-
AACK07_RS03435 (MAFF301069_06680)	yacG	738271..738486 (-)	216	WP_011002736.1	DNA gyrase inhibitor YacG	-
AACK07_RS03440 (MAFF301069_06690)	zapD	738497..739255 (-)	759	WP_016723794.1	cell division protein ZapD	-
AACK07_RS03445 (MAFF301069_06700)	coaE	739373..739987 (-)	615	WP_019718221.1	dephospho-CoA kinase	-
AACK07_RS03450 (MAFF301069_06710)	pilD	740000..740881 (-)	882	WP_029240316.1	A24 family peptidase	Machinery gene
AACK07_RS03455 (MAFF301069_06720)	pilC	740884..742149 (-)	1266	WP_019718222.1	type II secretion system F family protein	Machinery gene
AACK07_RS03460 (MAFF301069_06730)	pilB	742194..743921 (-)	1728	WP_087451136.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AACK07_RS03465 (MAFF301069_06740)	-	744169..745446 (-)	1278	WP_016723792.1	HlyC/CorC family transporter	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 31573.54 Da
• Isoelectric Point: 8.3415

>NTDB_id=97301 AACK07_RS03450 WP_029240316.1 740000..740881(-) (pilD) [Ralstonia pseudosolanacearum strain MAFF 301069]
MPGMFVIPTLAQLPAWFVIGAGTLLGLLVGSFLNVVIHRLPRMIEREEANYIAELRNEPLPHPEPYNLVVPRSACPSCGH
QIKAVENIPVLSWLALRGRCSACKTPISWRYPAVELVTGVLTGACLWHFGPTWVAVASAALLWFLIAGSMIDADTQLLPD
AITQPLLWLGLLVNLFSMFARLPDAVIGATAGYLFLWAIYWAYKLLRGREGMGYGDFKLMGALGAWFGWQALPLLVLLSS
VVGLVFGVVRIARGATSESPFSFGPFIAGAGVIALLAGPQLVALTGLAPLLAR

Nucleotide

• Length: 882 bp

>NTDB_id=97301 AACK07_RS03450 WP_029240316.1 740000..740881(-) (pilD) [Ralstonia pseudosolanacearum strain MAFF 301069]
ATGCCCGGAATGTTCGTCATTCCCACGCTGGCGCAACTGCCGGCGTGGTTCGTGATCGGCGCGGGGACGCTGCTGGGCTT
GCTGGTCGGCAGCTTCCTCAACGTGGTGATTCACCGCCTGCCGCGCATGATCGAGCGCGAAGAGGCCAACTACATCGCCG
AGCTGCGCAACGAACCGCTGCCGCATCCCGAGCCGTACAACCTGGTCGTGCCGCGCTCGGCCTGCCCGTCGTGCGGCCAC
CAGATCAAAGCGGTCGAGAACATCCCGGTGCTGAGCTGGCTGGCGTTGCGCGGCCGCTGCAGCGCCTGCAAGACCCCCAT
CTCCTGGCGCTATCCCGCCGTGGAGCTGGTGACCGGCGTGCTGACCGGCGCCTGCTTGTGGCACTTCGGACCGACCTGGG
TAGCGGTGGCCTCGGCCGCGCTGCTGTGGTTCCTGATCGCCGGCTCGATGATCGACGCCGACACGCAACTCCTGCCCGAT
GCCATCACCCAGCCGCTGCTGTGGCTCGGCCTGCTGGTGAACCTGTTCAGCATGTTCGCGCGGCTGCCGGACGCGGTAAT
CGGCGCGACGGCGGGGTATCTGTTCCTGTGGGCCATCTACTGGGCCTATAAGCTCCTGCGCGGCCGGGAAGGCATGGGCT
ACGGCGACTTCAAGCTGATGGGCGCGCTGGGCGCCTGGTTCGGCTGGCAGGCGCTGCCGCTGCTGGTGCTGCTGTCGTCG
GTGGTCGGCCTGGTGTTCGGGGTGGTGCGCATCGCGCGCGGCGCCACGAGCGAATCGCCGTTCTCGTTCGGCCCGTTCAT
CGCGGGTGCCGGCGTGATCGCGCTGCTGGCCGGCCCGCAACTGGTGGCGCTGACGGGGCTCGCGCCACTGCTGGCGCGGT
AA

Domains

Predicted by InterProScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (24-129)

• Type IV leader peptidase family (Peptidase_A24) (140-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.453	90.444	0.474
pilD	Vibrio campbellii strain DS40M4	48.736	94.539	0.461
pilD	Neisseria gonorrhoeae MS11	48.881	91.468	0.447
pilD	Acinetobacter nosocomialis M2	45.865	90.785	0.416
pilD	Acinetobacter baumannii D1279779	45.865	90.785	0.416