Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   WOC14_RS07670 Genome accession   NZ_CP150846
Coordinates   1656267..1656902 (+) Length   211 a.a.
NCBI ID   WP_051099753.1    Uniprot ID   A0A0E9ZJ72
Organism   Pseudomonas asiatica strain CJ23     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1651267..1661902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WOC14_RS07650 - 1651273..1652205 (+) 933 WP_013971560.1 ABC transporter ATP-binding protein -
  WOC14_RS07655 - 1652202..1652981 (+) 780 WP_015269397.1 ABC transporter permease -
  WOC14_RS07660 - 1652991..1653497 (-) 507 Protein_1486 DUF2062 domain-containing protein -
  WOC14_RS07665 comA 1653640..1655853 (+) 2214 WP_096010080.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  WOC14_RS07670 exbB 1656267..1656902 (+) 636 WP_051099753.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  WOC14_RS07675 - 1656899..1657333 (+) 435 WP_054572823.1 biopolymer transporter ExbD -
  WOC14_RS07680 lpxK 1657333..1658334 (+) 1002 WP_061302947.1 tetraacyldisaccharide 4'-kinase -
  WOC14_RS07685 - 1658379..1658564 (+) 186 WP_011532874.1 Trm112 family protein -
  WOC14_RS07690 kdsB 1658561..1659325 (+) 765 WP_054572821.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  WOC14_RS07695 - 1659325..1659789 (+) 465 WP_003259973.1 low molecular weight protein-tyrosine-phosphatase -
  WOC14_RS07700 murB 1659786..1660805 (+) 1020 WP_054572820.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22860.11 Da        Isoelectric Point: 7.3616

>NTDB_id=972917 WOC14_RS07670 WP_051099753.1 1656267..1656902(+) (exbB) [Pseudomonas asiatica strain CJ23]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=972917 WOC14_RS07670 WP_051099753.1 1656267..1656902(+) (exbB) [Pseudomonas asiatica strain CJ23]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGTCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCACTGGGCGAAATCCTTGCCGCCGGTCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAGGAATGCATCGAGGAGGCCGCTTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCTCCGCTGTTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCGGTGTTGGCCGGTGGTATCTCCAAAGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTTGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCAGCGCCGCATCGATGAGTTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAGGTGATCCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E9ZJ72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825

Multiple sequence alignment