Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   WOC14_RS07665 Genome accession   NZ_CP150846
Coordinates   1653640..1655853 (+) Length   737 a.a.
NCBI ID   WP_096010080.1    Uniprot ID   A0A2A3M7Y1
Organism   Pseudomonas asiatica strain CJ23     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1648640..1660853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WOC14_RS07645 - 1650505..1651128 (+) 624 WP_015269396.1 glutathione S-transferase -
  WOC14_RS07650 - 1651273..1652205 (+) 933 WP_013971560.1 ABC transporter ATP-binding protein -
  WOC14_RS07655 - 1652202..1652981 (+) 780 WP_015269397.1 ABC transporter permease -
  WOC14_RS07660 - 1652991..1653497 (-) 507 Protein_1486 DUF2062 domain-containing protein -
  WOC14_RS07665 comA 1653640..1655853 (+) 2214 WP_096010080.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  WOC14_RS07670 exbB 1656267..1656902 (+) 636 WP_051099753.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  WOC14_RS07675 - 1656899..1657333 (+) 435 WP_054572823.1 biopolymer transporter ExbD -
  WOC14_RS07680 lpxK 1657333..1658334 (+) 1002 WP_061302947.1 tetraacyldisaccharide 4'-kinase -
  WOC14_RS07685 - 1658379..1658564 (+) 186 WP_011532874.1 Trm112 family protein -
  WOC14_RS07690 kdsB 1658561..1659325 (+) 765 WP_054572821.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  WOC14_RS07695 - 1659325..1659789 (+) 465 WP_003259973.1 low molecular weight protein-tyrosine-phosphatase -
  WOC14_RS07700 murB 1659786..1660805 (+) 1020 WP_054572820.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79753.75 Da        Isoelectric Point: 10.3449

>NTDB_id=972916 WOC14_RS07665 WP_096010080.1 1653640..1655853(+) (comA) [Pseudomonas asiatica strain CJ23]
MRTGMFALALGLLCLGFLPGLPSVGWLVLLAVAGGIGLFTRLWPLGCFLLGLCWACWSAQQALDDRLATGLDGRTLWLEG
RVVGLPTRTAQGVRFELDAARSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVVGGWRDTLRQRLLAVEANGRQTALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRQLGANLPLLLALIAVLLVEPL
AALLPGFWLSFAAVATLVYCFSARLGSWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGGVGEALLWLAGGLLDVLFRLLELVAQQQSAWLPAVLPLWAWLLVCLGTLLVLMPRGVPLRGLGGVMLLALW
VPRETVPFGQVEVWQLDVGQGLAVLLRTRHHNLLYDAGPARGESDLGERVVLPTLRKLGVGSLDLMLVSHAHADHAGGAG
AIMRGLPVERVIGGELLDDLQLQPCVSGEQWMWDGVRFSMWRWADGQSSNDRSCVLLVEAQGERLLLAGDMEAGAERAWL
AATEAPRIDWLQSPHHGSRSSSSEAFIRATAPRGVLISRGRNNSFGHPHAQVVERYRRHGVVMHDTAEQGALRLVLGRLG
EVEGVRGQRRFWRVRVQ

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=972916 WOC14_RS07665 WP_096010080.1 1653640..1655853(+) (comA) [Pseudomonas asiatica strain CJ23]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTCCCCGGATTGCCATCGGTCGGATGGCT
GGTGCTGCTGGCTGTAGCCGGTGGCATCGGCCTGTTTACCCGGCTGTGGCCACTGGGCTGTTTTCTGTTGGGCCTGTGTT
GGGCCTGCTGGTCTGCGCAGCAGGCGCTGGATGACCGCCTGGCAACCGGGCTGGATGGCCGCACCTTGTGGCTTGAGGGC
CGGGTGGTCGGCCTGCCGACCCGGACTGCGCAGGGTGTGCGCTTCGAGCTGGACGCGGCCCGCTCGCGGCGGGCAGAGCT
GCCGCAGCGCCTGCAACTGAGCTGGTTCGACGGCCCGCCGCTGCGCGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGCCGGGCTGCTCAACCCGCATGGACCGGACCGTGAGGCGCAATTGCTGGCGCGGCGGGTCGGTGCGACCGGT
ACGGTCAAGGCCGGGCAGTTGCTGGCGCCGGTTGTCGGCGGCTGGCGCGACACGCTGCGCCAGCGCCTGCTGGCAGTCGA
GGCCAATGGCCGGCAGACAGCGTTGGTGGCGCTGGTGCTTGGCGACGGGGCGGGCCTGGCCCGGGAGGACTGGCAAACGT
TGCAGGCCACCGGCACGGTGCACTTGCTGGTGATCTCTGGCCAGCACATCGGCCTGGTTGCCGGCTTGCTGTATGGCCTG
GTTGCCGGGCTGGCGCGTTGGGGGCTGTGGCCCGCTCGGTTGCCGTGGCTGCCCTGGGCGTGTGGCTTGGCCATGGCTGC
GGCACTGGCCTACGGTTGGTTGGCTGGTGGCGGTGTACCGGTGCAGCGTGCCTGCCTGATGCTGGCCGTGGTGTTGCTCT
GGCGCCTGCGTTTTCGCCAACTGGGTGCGAACTTACCGTTGTTGCTGGCGCTGATTGCCGTACTGTTGGTGGAGCCGTTG
GCCGCGCTGCTGCCCGGGTTCTGGCTGTCGTTCGCGGCCGTGGCCACGCTTGTCTATTGCTTCAGTGCCCGCCTGGGCAG
CTGGCGGCCCTGGCAGGCCTGGACGCGGGCGCAATGGGTGATTGCGATCGGCTTGCTGCCGGTACTGCTGGCTACGGGCT
TGCCGGTGAGCTTGAGTGCGCCGCTGGCCAACCTTGTTGCGGTGCCCTGGGTCAGCCTGGCCGTGCTGCCATTGGCATTG
CTGGGCACTTTGCTGCTGCCGTTGGGCGGGGTAGGGGAGGCACTGCTCTGGCTGGCGGGAGGTTTGCTCGATGTGCTCTT
CCGGCTGCTGGAGTTGGTGGCGCAACAGCAGTCGGCGTGGCTGCCAGCAGTTCTGCCGTTGTGGGCCTGGCTGCTGGTGT
GCCTGGGTACGTTGCTGGTTTTGATGCCCCGTGGCGTACCACTGCGCGGGTTGGGTGGCGTAATGCTGCTGGCGCTGTGG
GTACCCCGGGAGACGGTGCCGTTCGGCCAGGTCGAGGTCTGGCAGCTGGACGTCGGCCAGGGGCTGGCAGTGCTTTTGCG
CACCCGGCATCACAACCTGCTGTACGACGCCGGGCCGGCCAGGGGCGAGAGCGACCTGGGCGAGCGGGTGGTGTTGCCGA
CCTTGCGCAAGCTGGGGGTGGGCAGCCTGGACCTGATGCTGGTCAGCCACGCCCATGCCGACCACGCCGGTGGTGCTGGC
GCAATCATGCGTGGCCTGCCGGTCGAACGGGTGATCGGCGGCGAATTGCTGGATGACCTGCAACTGCAACCTTGCGTAAG
TGGCGAGCAGTGGATGTGGGATGGCGTGCGCTTTTCGATGTGGCGCTGGGCCGATGGGCAGAGCAGCAATGACCGCTCCT
GTGTGTTGTTGGTCGAGGCGCAGGGTGAGCGGTTGTTGCTGGCGGGAGACATGGAGGCCGGTGCCGAACGGGCCTGGCTG
GCGGCCACGGAAGCACCGCGGATCGACTGGTTGCAGTCGCCGCATCACGGCAGCCGCAGTTCGTCCAGCGAGGCCTTCAT
CCGCGCCACGGCGCCGCGCGGGGTACTGATTTCGCGGGGGCGCAACAACAGCTTCGGGCACCCGCATGCGCAGGTGGTCG
AACGTTATCGGCGGCATGGGGTGGTGATGCATGACACGGCGGAGCAGGGGGCGTTGCGGTTGGTGCTGGGGAGGCTGGGG
GAGGTGGAGGGTGTGCGGGGGCAGAGGCGGTTTTGGCGGGTTCGGGTGCAGTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-462)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A3M7Y1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.306

97.693

0.579
  comA Ralstonia pseudosolanacearum GMI1000

35.422

100

0.376

Multiple sequence alignment