Detailed information NTG0972911

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: WOC14_RS03325
• Genome accession: NZ_CP150846
• Coordinates: 716472..717338 (-)
• Length: 288 a.a.
• NCBI ID: WP_406833790.1
• Uniprot ID: -
• Organism: Pseudomonas asiatica strain CJ23
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 711472..722338

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WOC14_RS03290	-	711686..712981 (-)	1296	WP_003260618.1	NAD(P)/FAD-dependent oxidoreductase	-
WOC14_RS03295	-	713066..713239 (-)	174	WP_013970765.1	DUF3094 family protein	-
WOC14_RS03300	-	713373..714002 (-)	630	WP_013970766.1	DUF1780 domain-containing protein	-
WOC14_RS03305	-	714058..714489 (-)	432	WP_054573229.1	hypothetical protein	-
WOC14_RS03310	-	714576..715283 (+)	708	WP_043935298.1	energy-coupling factor ABC transporter permease	-
WOC14_RS03315	yacG	715652..715852 (-)	201	WP_003260624.1	DNA gyrase inhibitor YacG	-
WOC14_RS03320	coaE	715849..716472 (-)	624	WP_013970769.1	dephospho-CoA kinase	-
WOC14_RS03325	pilD	716472..717338 (-)	867	WP_406833790.1	prepilin peptidase	Machinery gene
WOC14_RS03330	-	717341..718549 (-)	1209	WP_015268864.1	type II secretion system F family protein	-
WOC14_RS03335	-	718765..719175 (+)	411	WP_169775154.1	pilin	-
WOC14_RS03345	-	719488..720696 (+)	1209	WP_406833791.1	tyrosine-type recombinase/integrase	-
WOC14_RS03350	-	720697..720909 (-)	213	WP_215520200.1	AlpA family transcriptional regulator	-
WOC14_RS03355	-	720919..721131 (-)	213	WP_406833792.1	hypothetical protein	-
WOC14_RS03360	-	721128..721811 (-)	684	WP_406833793.1	hypothetical protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32059.27 Da
• Isoelectric Point: 7.9596

>NTDB_id=972911 WOC14_RS03325 WP_406833790.1 716472..717338(-) (pilD) [Pseudomonas asiatica strain CJ23]
MTLWTLLAEQPAYFLTLATVLGLLVGSFLNVLVYRLPIMLERQWQREAQEMLELPITPHERFDLWLPASRCPHCAHRIRA
WENIPVISYLALRGRCSACKTRISPRYPLVELASALLSLVVVWRFGASPEALLALPLTWCLLALSLIDAEHQLLPDALVL
PMLWLGLIVNAFGLYVPLTSALWGAVAGYLSLWTVYWVFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LAGLCLLRLRRHAMGTAIPFGPYLAIAGWIAVLWGDEIYASYTNLLGF

Nucleotide

• Length: 867 bp

>NTDB_id=972911 WOC14_RS03325 WP_406833790.1 716472..717338(-) (pilD) [Pseudomonas asiatica strain CJ23]
ATGACTTTATGGACTTTGCTGGCTGAGCAGCCGGCGTACTTTCTCACCCTGGCCACGGTGCTCGGCCTGCTGGTGGGCAG
TTTTCTCAACGTGCTGGTGTATCGCCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCGCAGGAAATGCTGGAAT
TGCCGATCACGCCGCACGAGCGTTTCGACCTGTGGCTACCCGCCTCGCGCTGCCCGCATTGTGCGCATCGGATTCGCGCG
TGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGCGCGGGCGTTGTTCAGCCTGCAAAACCCGCATCAGCCCGCGCTA
CCCATTGGTGGAGTTAGCCAGCGCGCTGCTGTCGCTGGTGGTGGTCTGGCGCTTTGGTGCTTCGCCCGAGGCCTTGCTGG
CGCTGCCGCTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCCGAGCACCAGTTGCTGCCGGATGCGCTGGTGCTG
CCGATGCTGTGGCTGGGGCTGATCGTCAACGCCTTCGGCCTCTACGTCCCGCTGACCAGCGCCCTGTGGGGCGCGGTGGC
CGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAAGCTGGTTACCGGCAAGGAAGGCATGGGCTATGGCGACTTCA
AGCTGATGGCGCTGATCGGGGCTTGGGGTGGCTGGCAGGTGTTGCCGTTGACCCTGCTGCTGTCGTCGGTGGTCGGGGCG
CTGGCTGGGCTGTGCCTGTTGCGCTTGCGCCGCCATGCCATGGGCACGGCGATCCCGTTTGGCCCCTATCTGGCGATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACACAAACCTGCTTGGATTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.545	95.486	0.521
pilD	Acinetobacter baumannii D1279779	52.857	97.222	0.514
pilD	Acinetobacter nosocomialis M2	52.143	97.222	0.507
pilD	Vibrio campbellii strain DS40M4	50.178	97.569	0.49
pilD	Neisseria gonorrhoeae MS11	50.558	93.403	0.472