Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   KDR_RS09345 Genome accession   NZ_CP150840
Coordinates   1880804..1883071 (-) Length   755 a.a.
NCBI ID   WP_010888489.1    Uniprot ID   -
Organism   Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1875804..1888071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDR_RS09325 msrA 1877376..1877948 (+) 573 WP_051618834.1 peptide-methionine (S)-S-oxide reductase MsrA -
  KDR_RS09330 - 1877948..1878175 (+) 228 WP_010888485.1 hypothetical protein -
  KDR_RS09335 - 1878254..1879009 (-) 756 WP_010888486.1 serine/threonine-protein kinase -
  KDR_RS09340 - 1879084..1880097 (-) 1014 WP_034350037.1 SIS domain-containing protein -
  KDR_RS09345 comEC 1880804..1883071 (-) 2268 WP_010888489.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KDR_RS09350 comEA 1883065..1883445 (-) 381 WP_010888490.1 ComEA family DNA-binding protein Machinery gene
  KDR_RS09355 gatA 1883675..1885123 (+) 1449 WP_010888491.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  KDR_RS09360 - 1885181..1885600 (-) 420 WP_010888492.1 organic hydroperoxide resistance protein -
  KDR_RS09365 - 1885706..1886458 (+) 753 WP_010888493.1 TSUP family transporter -
  KDR_RS09370 - 1886496..1887278 (-) 783 WP_027479797.1 DUF4388 domain-containing protein -
  KDR_RS09375 scpB 1887382..1887930 (-) 549 WP_010888496.1 SMC-Scp complex subunit ScpB -

Sequence

Protein


Download         Length: 755 a.a.        Molecular weight: 79381.05 Da        Isoelectric Point: 10.8771

>NTDB_id=972871 KDR_RS09345 WP_010888489.1 1880804..1883071(-) (comEC) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939]
MVTREGATRFDPQTGEVLTAPARRRGHRAEAGRLAWPLPLALGIIGGIGWQLGLGWAAVPLLLGAALALLDARPLLAVLA
LLGGGLGYGSAHLQAREPDRIAPWIGALVTLRGHWDGQFLTLDEPKARVALAPKPRQGPGEVVVAGRLIRPDGRRIPGGF
DQAAWLRSQGGLLVPTPKAVLVRAEVKKHVPERGLRGWFRRGLSAHLSPRNAALMTAVELGERGDIGRETFDEGFSVRDA
FARAGLAHLMALSGQNVALLTGTLIWLLGWLGARPSWRYGLPAALLPFYLLLLVGATPSITRAVLMGGVALLALMVGRGR
PDPLGIVALTASACLLLFPLWLLDVGFQLSFLAVLGLLLSGKLADRLPQRWPQWLKLALAATVLAELATLPVIAHNFGQL
PLVGLPANLLAAPIMAVLVPLGFLAGLLGPAGGLVNWAVAPLASALLWVAQTFGSAPVLGWGTLGAGGFLAYALAAVAGM
GWLLGRVRGQAALTIALACAALSWLPAQLRPARELVFLDVGQGDATLLRVPGLTMLVDGGGSVGSDYDVGRGTVLPALRA
LGVRKLDVVVATHADTDHIEGLSSVLRGLPVGELWVGQLKKAGDDPVLDAVLTAARERNVPVRQIRRGDQVTAGPVKVTA
LWPVGNVWSTADNDNSVALRVEDGPFRAALLGDLPDPAEALIGPGHLTLLKAAHHGSRYSTGEVLLKQTKPKDVLISVGR
NTYGHPTQAVLDRIAAAGAKVWRTDQVGTVRWPLP

Nucleotide


Download         Length: 2268 bp        

>NTDB_id=972871 KDR_RS09345 WP_010888489.1 1880804..1883071(-) (comEC) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939]
ATGGTGACTCGTGAAGGGGCGACCCGCTTCGACCCGCAAACGGGTGAGGTGCTGACTGCCCCTGCCCGCCGTCGGGGTCA
CCGCGCCGAGGCCGGGCGGCTGGCGTGGCCGCTCCCCCTCGCGCTCGGCATCATCGGCGGCATCGGGTGGCAGCTCGGGC
TGGGGTGGGCCGCCGTGCCGCTGCTGCTCGGTGCAGCGTTGGCCCTGCTGGACGCCCGCCCGCTGCTGGCGGTGCTCGCG
CTGCTCGGTGGAGGACTGGGGTACGGCTCGGCGCACTTGCAGGCCCGCGAGCCGGACCGCATCGCCCCCTGGATAGGTGC
CCTCGTGACCCTGCGCGGCCACTGGGACGGGCAATTTCTGACGCTGGACGAGCCGAAAGCGCGGGTGGCCCTCGCTCCCA
AACCGAGGCAAGGGCCGGGCGAAGTGGTGGTGGCCGGGCGGCTGATTCGCCCCGATGGCCGGCGTATTCCCGGCGGCTTT
GACCAGGCGGCGTGGCTGCGCTCGCAAGGCGGGCTTCTGGTGCCCACGCCGAAAGCCGTGCTGGTGCGTGCCGAGGTCAA
AAAGCATGTCCCGGAACGTGGCCTGCGCGGCTGGTTTCGTCGGGGCCTGAGTGCCCATCTCTCGCCCCGCAACGCTGCCC
TGATGACGGCGGTGGAACTCGGCGAGCGCGGTGACATCGGACGCGAAACGTTTGATGAGGGCTTCTCGGTGCGCGACGCC
TTTGCCCGCGCTGGGCTCGCGCACCTGATGGCGTTGAGCGGGCAGAACGTGGCGCTGCTGACTGGCACATTGATCTGGCT
GCTCGGGTGGCTGGGGGCGCGGCCCAGCTGGCGCTATGGCCTGCCCGCCGCGCTGCTGCCCTTTTACCTGCTGCTCCTCG
TCGGCGCCACACCGAGCATCACCCGCGCCGTGCTGATGGGCGGTGTGGCCCTGCTCGCGCTGATGGTGGGCCGGGGGCGG
CCCGACCCGTTGGGCATCGTGGCGCTGACAGCGAGTGCCTGCCTGCTGTTGTTTCCGCTGTGGCTGCTGGACGTGGGGTT
TCAGCTTTCCTTTCTGGCGGTCCTCGGCCTGCTGCTCTCGGGCAAACTGGCCGACCGGCTGCCGCAGCGCTGGCCGCAGT
GGCTCAAGCTCGCGCTCGCGGCCACCGTGCTCGCCGAACTCGCCACCCTGCCAGTCATCGCGCACAATTTCGGGCAACTG
CCGCTGGTGGGCTTGCCCGCCAACCTGCTCGCCGCGCCCATCATGGCGGTGCTGGTGCCGCTCGGCTTCCTCGCGGGGCT
GCTCGGCCCGGCAGGCGGGCTGGTGAACTGGGCCGTGGCGCCGCTCGCTTCTGCTCTGCTGTGGGTCGCGCAGACTTTCG
GCAGTGCCCCGGTGCTGGGCTGGGGCACGCTCGGCGCGGGCGGCTTTCTTGCCTACGCGCTCGCCGCTGTTGCGGGGATG
GGTTGGCTGCTCGGGCGGGTGCGGGGGCAAGCCGCGTTGACCATTGCCCTCGCCTGCGCCGCGCTGTCCTGGCTGCCGGC
CCAGTTGCGCCCCGCCCGCGAACTGGTCTTTCTGGACGTGGGCCAGGGCGACGCCACCCTGCTGCGGGTGCCGGGCCTGA
CGATGCTCGTGGACGGCGGCGGCTCGGTCGGCAGCGACTACGACGTGGGCCGGGGCACCGTGTTGCCGGCTTTGCGGGCT
CTCGGGGTGCGGAAGCTGGACGTGGTGGTGGCGACGCACGCCGACACCGACCACATCGAGGGCCTTTCCAGCGTCCTGCG
CGGTCTTCCGGTGGGCGAGTTGTGGGTGGGCCAGCTCAAAAAGGCGGGCGACGACCCGGTGCTCGACGCCGTGCTGACCG
CTGCCCGTGAAAGAAATGTCCCGGTGCGCCAGATTCGGCGGGGCGACCAGGTGACGGCGGGACCGGTCAAAGTGACGGCT
CTGTGGCCTGTCGGCAACGTCTGGTCCACTGCTGACAACGACAACTCGGTGGCGCTGCGGGTCGAGGACGGACCATTCCG
TGCCGCCTTGCTCGGTGACTTGCCCGACCCCGCCGAGGCCCTGATTGGCCCCGGTCACCTCACGCTGCTCAAGGCCGCGC
ACCACGGCAGCCGCTACAGCACCGGCGAAGTCCTCCTCAAGCAGACGAAGCCGAAAGACGTGCTTATCAGCGTGGGACGC
AACACTTACGGACACCCGACACAGGCGGTGCTCGACCGAATAGCCGCTGCCGGGGCGAAGGTATGGCGGACCGATCAGGT
GGGAACGGTGCGGTGGCCTTTGCCTTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(237-482)

Metallo-beta-lactamase superfamily (Lactamase_B)

(519-708)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

100

100

1

Multiple sequence alignment