Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   KDR_RS09350 Genome accession   NZ_CP150840
Coordinates   1883065..1883445 (-) Length   126 a.a.
NCBI ID   WP_010888490.1    Uniprot ID   Q9RTB0
Organism   Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1878065..1888445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDR_RS09335 - 1878254..1879009 (-) 756 WP_010888486.1 serine/threonine-protein kinase -
  KDR_RS09340 - 1879084..1880097 (-) 1014 WP_034350037.1 SIS domain-containing protein -
  KDR_RS09345 comEC 1880804..1883071 (-) 2268 WP_010888489.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KDR_RS09350 comEA 1883065..1883445 (-) 381 WP_010888490.1 ComEA family DNA-binding protein Machinery gene
  KDR_RS09355 gatA 1883675..1885123 (+) 1449 WP_010888491.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  KDR_RS09360 - 1885181..1885600 (-) 420 WP_010888492.1 organic hydroperoxide resistance protein -
  KDR_RS09365 - 1885706..1886458 (+) 753 WP_010888493.1 TSUP family transporter -
  KDR_RS09370 - 1886496..1887278 (-) 783 WP_027479797.1 DUF4388 domain-containing protein -
  KDR_RS09375 scpB 1887382..1887930 (-) 549 WP_010888496.1 SMC-Scp complex subunit ScpB -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13354.65 Da        Isoelectric Point: 10.7165

>NTDB_id=972872 KDR_RS09350 WP_010888490.1 1883065..1883445(-) (comEA) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939]
MLPHERLWQVALAAGALLVGGLTLGPALLPRPQLPTVTRTALPPVQADANAEPRTYPTTASVTPLISGRVNLNTASQEQL
EALPKVGPAMAKKIIAGRPYHSLADLDRVKGVGEATLRTLTPLVKW

Nucleotide


Download         Length: 381 bp        

>NTDB_id=972872 KDR_RS09350 WP_010888490.1 1883065..1883445(-) (comEA) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939]
ATGCTCCCTCACGAACGGCTCTGGCAGGTGGCGCTGGCGGCGGGCGCTTTGCTCGTCGGCGGCCTGACCCTCGGCCCCGC
GCTGCTGCCGCGCCCGCAGCTGCCGACGGTGACGCGCACGGCGCTGCCGCCCGTTCAGGCCGACGCGAACGCCGAGCCGC
GGACTTACCCGACCACTGCGAGCGTCACGCCCCTCATCAGCGGGCGGGTGAACCTGAACACGGCGAGTCAGGAGCAGCTC
GAAGCCCTTCCCAAAGTCGGCCCGGCGATGGCGAAGAAAATTATCGCCGGGCGGCCCTACCACTCGCTCGCTGACCTGGA
CCGCGTGAAAGGCGTGGGCGAAGCGACCCTCCGCACGCTGACGCCGCTGGTGAAATGGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(69-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RTB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

100

100

1

Multiple sequence alignment