Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACL6EQ_RS12430 Genome accession   NZ_CP178716
Coordinates   2406959..2408089 (-) Length   376 a.a.
NCBI ID   WP_042976548.1    Uniprot ID   -
Organism   Bacillus subtilis strain SY1483     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2401959..2413089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6EQ_RS12395 (ACL6EQ_12395) nucA/comI 2402137..2402547 (-) 411 WP_009967785.1 sporulation-specific Dnase NucB Machinery gene
  ACL6EQ_RS12400 (ACL6EQ_12400) sigK 2402743..2403471 (+) 729 WP_013308023.1 RNA polymerase sporulation sigma factor SigK -
  ACL6EQ_RS12405 (ACL6EQ_12405) - 2403471..2403587 (+) 117 WP_185183705.1 hypothetical protein -
  ACL6EQ_RS12410 (ACL6EQ_12410) - 2403553..2403749 (-) 197 Protein_2422 recombinase family protein -
  ACL6EQ_RS12415 (ACL6EQ_12415) - 2403707..2403871 (-) 165 Protein_2423 hypothetical protein -
  ACL6EQ_RS12420 (ACL6EQ_12420) - 2404117..2405022 (-) 906 WP_069704085.1 LysR family transcriptional regulator -
  ACL6EQ_RS12425 (ACL6EQ_12425) - 2405153..2406412 (+) 1260 WP_185183714.1 amino acid permease -
  ACL6EQ_RS12430 (ACL6EQ_12430) rapC 2406959..2408089 (-) 1131 WP_042976548.1 hypothetical protein Regulator
  ACL6EQ_RS12435 (ACL6EQ_12435) - 2408264..2410117 (+) 1854 WP_413358524.1 T7SS effector LXG polymorphic toxin -
  ACL6EQ_RS12440 (ACL6EQ_12440) - 2410129..2410581 (+) 453 WP_185183713.1 SMI1/KNR4 family protein -
  ACL6EQ_RS12445 (ACL6EQ_12445) cdiI 2410678..2411037 (+) 360 WP_076458157.1 ribonuclease toxin immunity protein CdiI -
  ACL6EQ_RS12450 (ACL6EQ_12450) atxG 2411389..2411967 (+) 579 WP_185183712.1 suppressor of fused domain protein -
  ACL6EQ_RS12455 (ACL6EQ_12455) - 2412077..2412367 (+) 291 WP_185183711.1 contact-dependent growth inhibition system immunity protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44157.53 Da        Isoelectric Point: 6.6961

>NTDB_id=972869 ACL6EQ_RS12430 WP_042976548.1 2406959..2408089(-) (rapC) [Bacillus subtilis strain SY1483]
MNPVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINQMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIDE
LLEKIEASNKGITGLLSYYSLFFRGMYEFDKREYVKAIGFYREAEKHLTHVNDDIEKAEFHFKLAEAYYIMKQNHISMHH
VKQAMDIYNQYELYKVRKIQCHFVISGNYVDFKHFEKSLPHLEKALELSKQLERNERLLSSAYYNLGKNYADLGINDKAD
HFLNEAAKVSESAKLSNLPHSLFTYAKFLFKQGKTSEAIKMSKKGLSAAISQGDKLFVSLQKYLEALYINAVDQAGIKKT
IDYLERNKNYAYVEDIAIDTAEVFAKSKEFETSYVYHQKMLETQKQIQRGECLYEF

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=972869 ACL6EQ_RS12430 WP_042976548.1 2406959..2408089(-) (rapC) [Bacillus subtilis strain SY1483]
GTGAATCCGGTTTTATCATCATCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTCCC
GGATGCAGAGATTTTAAAGGCTGAGGTGGAACAAGAGATCAATCAGATGGAGGAAGATGAGTATTTACTTATTTACTTCT
CTCTAATGAAATTCCGTCATCAGCTTATGTTAGATTATTTGGAACCAGTTACAACAAGAATCAGGCCAACTATTGATGAA
CTGCTTGAAAAAATAGAAGCATCCAATAAGGGGATAACTGGTCTGTTGTCTTACTACTCTCTGTTTTTTCGTGGAATGTA
TGAGTTTGATAAGAGGGAATATGTCAAAGCAATTGGTTTTTATCGAGAAGCAGAAAAACACCTTACTCATGTTAATGATG
ATATTGAGAAGGCGGAATTTCATTTTAAGTTGGCTGAAGCTTACTATATTATGAAGCAAAATCATATCTCGATGCACCAT
GTTAAACAAGCGATGGACATTTATAATCAATATGAACTTTATAAAGTGCGAAAAATACAATGTCATTTCGTGATATCTGG
AAATTACGTTGATTTTAAACATTTCGAGAAAAGCTTGCCGCACCTTGAAAAAGCCTTAGAGTTGTCCAAACAATTAGAGC
GCAATGAAAGGCTGCTTAGCTCGGCTTACTACAATCTCGGAAAGAATTACGCAGATTTAGGAATAAATGATAAAGCAGAT
CATTTCTTAAATGAGGCTGCCAAGGTATCAGAAAGTGCTAAGTTGAGCAATTTACCACATTCACTGTTTACATACGCTAA
ATTTCTTTTTAAGCAAGGGAAAACAAGTGAAGCAATAAAAATGAGTAAAAAGGGTTTATCCGCTGCAATATCCCAAGGTG
ATAAACTTTTTGTGTCCTTGCAAAAGTATTTGGAAGCACTTTATATTAATGCAGTAGATCAAGCGGGAATCAAAAAAACG
ATTGATTACTTAGAAAGAAATAAGAATTATGCGTATGTGGAAGATATCGCAATTGATACGGCTGAAGTTTTTGCAAAATC
AAAGGAATTTGAAACATCATATGTTTATCATCAAAAAATGCTTGAAACGCAAAAACAAATTCAGAGGGGAGAATGCCTGT
ATGAATTTTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_8)

(221-251)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.681

100

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.842

100

0.423