Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   KDR_RS06255 Genome accession   NZ_CP150840
Coordinates   1245102..1245566 (+) Length   154 a.a.
NCBI ID   WP_010887875.1    Uniprot ID   Q9RUZ8
Organism   Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1240102..1250566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDR_RS06245 - 1241958..1242704 (-) 747 WP_373969211.1 DUF4388 domain-containing protein -
  KDR_RS06250 - 1242847..1245105 (+) 2259 WP_162177751.1 hypothetical protein -
  KDR_RS06255 pilV 1245102..1245566 (+) 465 WP_010887875.1 type II secretion system protein Machinery gene
  KDR_RS06260 - 1245567..1246127 (+) 561 WP_010887876.1 type II secretion system protein -
  KDR_RS06265 - 1246127..1247008 (+) 882 WP_010887877.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  KDR_RS06270 - 1247070..1248794 (+) 1725 WP_027480202.1 dynamin family protein -
  KDR_RS06275 - 1248870..1249781 (+) 912 WP_034350720.1 cation diffusion facilitator family transporter -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16402.98 Da        Isoelectric Point: 9.7879

>NTDB_id=972868 KDR_RS06255 WP_010887875.1 1245102..1245566(+) (pilV) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939]
MKDRGQSGMTLIELLVVIAIIGILMGLFGWNLVRSIRAAELREAATQVAVDLRQARSQAQRGSRDIVVVLPGSTGGTTYR
FDTDVKTIPNNVQLICKSNCGTGTTTNITYQAPYGELGAIGSIYTVRSPMNGIGDYEIRIVGVTGKVILAKAGS

Nucleotide


Download         Length: 465 bp        

>NTDB_id=972868 KDR_RS06255 WP_010887875.1 1245102..1245566(+) (pilV) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 strain ATCC 13939]
ATGAAAGATCGTGGACAATCGGGGATGACTCTTATTGAACTGCTGGTTGTCATAGCGATCATCGGTATTTTGATGGGTCT
GTTCGGCTGGAATCTTGTGCGAAGCATTCGGGCTGCCGAGCTGCGGGAAGCGGCGACTCAGGTGGCGGTGGATCTACGCC
AGGCGCGCTCGCAGGCGCAGCGGGGCAGCAGAGATATTGTTGTCGTGTTGCCGGGGAGTACAGGCGGAACCACCTATAGG
TTCGACACGGACGTTAAAACCATTCCCAACAATGTGCAGCTGATCTGCAAATCGAATTGCGGCACCGGCACGACGACGAA
CATCACTTATCAGGCACCGTACGGCGAATTGGGCGCTATAGGGAGCATCTATACCGTCAGGAGCCCCATGAACGGAATTG
GCGATTATGAAATCAGAATCGTGGGCGTAACCGGCAAAGTCATTCTTGCTAAAGCGGGGTCCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RUZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

100

100

1

Multiple sequence alignment