Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   WN777_RS27205 Genome accession   NZ_CP150839
Coordinates   5270232..5270744 (-) Length   170 a.a.
NCBI ID   WP_000981966.1    Uniprot ID   A0A0A3WKS9
Organism   Bacillus pacificus strain SG15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5265232..5275744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WN777_RS27185 (WN777_27160) rplI 5266441..5266887 (-) 447 WP_000864231.1 50S ribosomal protein L9 -
  WN777_RS27190 (WN777_27165) - 5266884..5268857 (-) 1974 WP_318160931.1 DHH family phosphoesterase -
  WN777_RS27195 (WN777_27170) - 5268936..5269871 (-) 936 WP_139868622.1 YybS family protein -
  WN777_RS27200 (WN777_27175) rpsR 5269953..5270186 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  WN777_RS27205 (WN777_27180) ssbA 5270232..5270744 (-) 513 WP_000981966.1 single-stranded DNA-binding protein Machinery gene
  WN777_RS27210 (WN777_27185) rpsF 5270771..5271061 (-) 291 WP_001233778.1 30S ribosomal protein S6 -
  WN777_RS27215 (WN777_27190) ychF 5271253..5272353 (-) 1101 WP_318160932.1 redox-regulated ATPase YchF -
  WN777_RS27220 (WN777_27195) - 5272469..5272666 (-) 198 WP_000436051.1 DUF951 domain-containing protein -
  WN777_RS27225 (WN777_27200) - 5272687..5273568 (-) 882 WP_087955263.1 mechanosensitive ion channel family protein -
  WN777_RS27230 (WN777_27205) yyaC 5273828..5274424 (+) 597 WP_139868624.1 spore protease YyaC -
  WN777_RS27235 (WN777_27210) spo0J 5274445..5275296 (-) 852 WP_087955265.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18494.29 Da        Isoelectric Point: 4.9327

>NTDB_id=972857 WN777_RS27205 WP_000981966.1 5270232..5270744(-) (ssbA) [Bacillus pacificus strain SG15]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNSGNQGNSGFTKNDDPFSNVGQP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=972857 WN777_RS27205 WP_000981966.1 5270232..5270744(-) (ssbA) [Bacillus pacificus strain SG15]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTAAATCGCGCATTTGCCAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGACGGACGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATACGTAACAGAAGTTCTTGCGGAAAGCGTGCAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGCGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTAGGTCAACCG
ATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A3WKS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.571

100

0.747
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

37.43

100

0.394

Multiple sequence alignment