Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   ACL6EQ_RS08155 Genome accession   NZ_CP178716
Coordinates   1584350..1584781 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain SY1483     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1579350..1589781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL6EQ_RS08135 (ACL6EQ_08135) spoVS 1579910..1580170 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  ACL6EQ_RS08140 (ACL6EQ_08140) tdh 1580437..1581480 (+) 1044 WP_033883737.1 L-threonine 3-dehydrogenase -
  ACL6EQ_RS08145 (ACL6EQ_08145) kbl 1581493..1582671 (+) 1179 WP_033883739.1 glycine C-acetyltransferase -
  ACL6EQ_RS08150 (ACL6EQ_08150) miaB 1582819..1584348 (+) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ACL6EQ_RS08155 (ACL6EQ_08155) ymcA 1584350..1584781 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  ACL6EQ_RS08160 (ACL6EQ_08160) cotE 1585042..1585587 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  ACL6EQ_RS08165 (ACL6EQ_08165) hexA 1585720..1588296 (+) 2577 WP_413360712.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=972840 ACL6EQ_RS08155 WP_003231834.1 1584350..1584781(+) (ymcA) [Bacillus subtilis strain SY1483]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=972840 ACL6EQ_RS08155 WP_003231834.1 1584350..1584781(+) (ymcA) [Bacillus subtilis strain SY1483]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCTCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment