Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   WN777_RS20745 Genome accession   NZ_CP150839
Coordinates   4047715..4049454 (-) Length   579 a.a.
NCBI ID   WP_000947752.1    Uniprot ID   A0A3P1C6F5
Organism   Bacillus pacificus strain SG15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4042715..4054454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WN777_RS20720 (WN777_20705) - 4043763..4043996 (+) 234 WP_098667350.1 DUF2627 domain-containing protein -
  WN777_RS20725 (WN777_20710) - 4044046..4044774 (-) 729 WP_139866720.1 glycerophosphodiester phosphodiesterase -
  WN777_RS20730 (WN777_20715) - 4044825..4044971 (+) 147 WP_001247671.1 YycC family protein -
  WN777_RS20735 (WN777_20720) spo0A 4045216..4046010 (-) 795 WP_014297988.1 sporulation transcription factor Spo0A Regulator
  WN777_RS20740 (WN777_20725) spoIVB 4046298..4047596 (-) 1299 WP_242294004.1 SpoIVB peptidase -
  WN777_RS20745 (WN777_20730) recN 4047715..4049454 (-) 1740 WP_000947752.1 DNA repair protein RecN Machinery gene
  WN777_RS20750 (WN777_20735) argR 4049722..4050171 (-) 450 WP_001032581.1 arginine repressor ArgR -
  WN777_RS20755 (WN777_20740) - 4050314..4051153 (-) 840 WP_001274742.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  WN777_RS20760 (WN777_20745) dxs 4051157..4053049 (-) 1893 WP_000366448.1 1-deoxy-D-xylulose-5-phosphate synthase -
  WN777_RS20765 (WN777_20750) ispA 4053353..4054243 (-) 891 WP_000150362.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65793.86 Da        Isoelectric Point: 4.8260

>NTDB_id=972840 WN777_RS20745 WP_000947752.1 4047715..4049454(-) (recN) [Bacillus pacificus strain SG15]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSVLKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGERIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENDLTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=972840 WN777_RS20745 WP_000947752.1 4047715..4049454(-) (recN) [Bacillus pacificus strain SG15]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGATTAACGGTTTT
AAGTGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGTTCAGCAGAAT
TTGTTCGATACGGAACAGAAAAAGCTGAGATAGAGGGGCTATTTTATGTGGAAGATGATAAGCATCCATGTATTGAAAAA
GCAGAAGAGTTGGATATAGAAATAGAAGACGGCATGATTATTTTGAAGCGTGATATCGCTGCAAACGGAAAAAGTGTATG
TCGTGTAAATGGAAAACTAGTTACCCTTAGTGTATTAAAAGAAATTGGAAAAACACTTGTTGATATTCATGGGCAACACG
AAACGCAAGACTTAATGAATGAAGAACGTCATCTATTTATGCTCGATCATTTTGATGGAGAGCGTATCGTTAAACAATTG
GATATATACCAAAACGTATACGCTGACTATGAGAAGTTAAAAAAACAGTTGAAATCGTTAAGTGAAAATGAACAACAAAT
GGCACATCGTTTAGATTTAATTCAATTCCAGCATGAAGAAATCCGTAAAGCGGATTTAAAGATGGATGAAGAAAATGACC
TAACTGAAGAACGATTGCAAATTTCTAATTTCGAGAAGATTTATAAAGCATTAGGTGACGCGTATCGCTCGTTAAGTGCT
GACGGACAAGGGCTAGATAATGTACGAAGCGCAATGGGACAAATGGAGAGTATTACACATTTAGATGAAGTGTATCAAGA
AAATCATGATTCCATTGCCAATAGTTATTATTTATTAGAAGAAGTTGCGTATCAACTAAGAGAAAAGCTCGATATGATGG
AATATGATCCGAATCGCTTAGACGAAATTGAAACGCGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAACTTG
CAGAGCATCTTACAAATGCCATTCATCAGGAATTAAAAGAATTGTATATGGAAAAAACAAAATTTGAAGTGAGAATAATG
AAACGAGAAGGAAATGCAGAAGAGCCTCTTGTGGAGGGAGCACCAGTAAGACTTACGGCGGATGGCTATGACCATGTGGA
ATTTTATATTTCAACAAATCCAGGTGAGCCGCTAAAACCACTTTCAAAGGTCGCTTCCGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGTATTTTTTCTAAGCATCAAGGTGTTGCATCTGTAATTTTTGATGAGGTGGATACTGGTGTAAGT
GGCCGGGTCGCACAGGCTATTGCGGAAAAAATTTATCGAGTATCAGTAAACTCACAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCGCATTTATTTATTCGAAAACAAGTAGCAAATGATCGAACAATTACGTCAGTTACCG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATTACAGACTTAACGACAGAACAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3P1C6F5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.104

100

0.601

Multiple sequence alignment