Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   WNC56_RS15450 Genome accession   NZ_CP150833
Coordinates   2974244..2974885 (-) Length   213 a.a.
NCBI ID   WP_024423322.1    Uniprot ID   A0AAP7QNQ1
Organism   Bacillus safensis strain DMB13     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2969244..2979885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WNC56_RS15415 (WNC56_15380) - 2970371..2970802 (+) 432 WP_024423315.1 Na(+)/H(+) antiporter subunit B -
  WNC56_RS15420 (WNC56_15385) - 2970802..2971143 (+) 342 WP_048237322.1 Na(+)/H(+) antiporter subunit C -
  WNC56_RS15425 (WNC56_15390) - 2971136..2972614 (+) 1479 WP_406845826.1 Na+/H+ antiporter subunit D -
  WNC56_RS15430 (WNC56_15395) - 2972621..2973100 (+) 480 WP_024423318.1 Na+/H+ antiporter subunit E -
  WNC56_RS15435 (WNC56_15400) - 2973100..2973381 (+) 282 WP_024423319.1 Na(+)/H(+) antiporter subunit F1 -
  WNC56_RS15440 (WNC56_15405) mnhG 2973365..2973739 (+) 375 WP_024423320.1 monovalent cation/H(+) antiporter subunit G -
  WNC56_RS15445 (WNC56_15410) - 2973831..2974220 (-) 390 WP_024423321.1 hotdog fold thioesterase -
  WNC56_RS15450 (WNC56_15415) comA 2974244..2974885 (-) 642 WP_024423322.1 response regulator transcription factor Regulator
  WNC56_RS15455 (WNC56_15420) comP 2974966..2977278 (-) 2313 WP_073207243.1 ATP-binding protein Regulator
  WNC56_RS15460 (WNC56_15425) comX 2977332..2977502 (-) 171 WP_073207246.1 competence pheromone ComX -
  WNC56_RS15465 (WNC56_15430) - 2977499..2978413 (-) 915 WP_024423324.1 polyprenyl synthetase family protein -
  WNC56_RS15470 (WNC56_15435) degQ 2978565..2978705 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  WNC56_RS15475 (WNC56_15440) - 2979211..2979567 (+) 357 WP_151039930.1 inner spore coat protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24149.54 Da        Isoelectric Point: 4.6344

>NTDB_id=972795 WNC56_RS15450 WP_024423322.1 2974244..2974885(-) (comA) [Bacillus safensis strain DMB13]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNHQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHDLLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=972795 WNC56_RS15450 WP_024423322.1 2974244..2974885(-) (comA) [Bacillus safensis strain DMB13]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGACCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTAA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTTTAGAAACCAACCATCAAGTGAAAATTATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCTATTCGGGCTGGATTACACGGTGCAATTAGCAAAACAGA
GACGAAAGACAAAATTATTGAATACATACACCGGACATTGCAAGGGGAAGTTGTCATTCAGCTGTCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACTGATCACGATCTCTTAACCGAACGGGAGTGTTTGATC
CTTAGAGAAGTGGAAAAAGGATACACGAACCAGGAGATTGCCGATGTGCTTCATTTGAGCAAACGGTCAATTGAGTACAG
TTTGACATCCATCTTTAATAAGCTGAATGTTGGATCTCGTACAGAAGCGGTGTTAATTGCCAAGTCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.963

100

0.723

Multiple sequence alignment